RNA-Seq Snakemake example with Jekyll homepage creation

STAR-HTSeq pipeline in snakemake.

counts to tpm/fpkm

Snakemake based pipeline for RNA-Seq analysis

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

A Snakemake workflow for TAP-seq data processing

Publication-ready volcano plots with enhanced colouring and labeling

Make Complex Heatmaps

Analysis of single cell RNA-seq data course

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

The Github Page with some of the information pertaining to the YouTube videos.

Lightweight Iterative Gene set Enrichment in R

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Gene Set Enrichment Analysis in Python

📊 A universal enrichment tool for interpreting omics data

New user

Example code from the book "Deep Learning for the Life Sciences"

Exon-Intron Split Analysis (EISA) in R

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.

Detecting intron retention from RNA-Seq experiments

Keep Me Around: Intron Retention Detection

Predict disease-causing probability of human intronic SNVs.

U12-type intron prediction and file parsing utility in modern C++

TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the ro…

Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.

Machine-curated database of genetic disease and genome-wide association studies