-
FMI
- Basel, Switzerland
-
04:57
(UTC +02:00) - @phlya
Block or Report
Block or report Phlya
Contact GitHub support about this user’s behavior. Learn more about reporting abuse.
Report abuse-
adjustText Public
A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.
-
snakemake-wrappers Public
Forked from snakemake/snakemake-wrappersThis is the development home of the Snakemake wrapper repository, see
CAP CDS UpdatedJun 25, 2024 -
hictk Public
Forked from paulsengroup/hictkBlazing fast toolkit to work with .hic and .cool files
C++ MIT License UpdatedMay 22, 2024 -
tagmap Public
Map insertions of transopable elements using tagmentation
Python MIT License UpdatedMay 8, 2024 -
CoolBox Public
Forked from GangCaoLab/CoolBoxJupyter notebook based genomic data visualization toolkit.
Python GNU General Public License v3.0 UpdatedDec 15, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 9, 2023 -
distill-reorder-C Public
snakemake workflow to analyze Hi-C-like data for multiple versions of the reference genome
Python MIT License UpdatedSep 15, 2023 -
-
C-integration-mapping Public
[wip] mapping integration sites of defined sequences using Hi-C-like data
Python MIT License UpdatedMar 17, 2023 -
hmm_bigwigs Public
Forked from gspracklin/hmm_bigwigsusing hmm on bigwigs
-
multiprocessing-logging-feedstock Public
Forked from conda-forge/multiprocessing-logging-feedstockA conda-smithy repository for multiprocessing-logging.
BSD 3-Clause "New" or "Revised" License UpdatedNov 1, 2022 -
cooltools Public
Forked from open2c/cooltoolsThe tools for your .cool's
-
pysradb Public
Forked from saketkc/pysradbPackage for fetching metadata and downloading data from SRA/ENA
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 7, 2020 -
mustache Public
Forked from ay-lab/mustacheMulti-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
Python MIT License UpdatedOct 1, 2020 -
coolpuppy_paper Public
Code and data used to replicate the analysis in the coolpup.py paper
-
snakemake-qsub Public
Forked from jaicher/snakemake-qsubSimple snakemake profile for qsub cluster
Python MIT License UpdatedJun 16, 2020 -
cooler Public
Forked from open2c/coolerA cool place to store your Hi-C
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2020 -
C-TALE-Normalization Public
Forked from ArtemLuzhin/C-TALE-NormalizationCode and examples for C-TALE normalization
Jupyter Notebook MIT License UpdatedMar 17, 2020 -
liftOverBedpe Public
Forked from dphansti/liftOverBedpeA liftOver wrapper to accomodate BEDPE files
-
higlass Public
Forked from higlass/higlassFast large scale matrix visualization for the web.
JavaScript MIT License UpdatedJan 10, 2020 -
biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (converted from CVS)
Python Other UpdatedDec 20, 2019 -
pyGenomeTracks Public
Forked from deeptools/pyGenomeTrackspython module to plot beautiful and highly customizable genome browser tracks
-
higlass-python Public
Forked from higlass/higlass-pythonPython bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
Python MIT License UpdatedSep 25, 2019 -
selfish Public
Forked from ay-lab/selfishSELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
Python MIT License UpdatedSep 6, 2019 -
Hi-CSGE Public archive
[DEPRECATED} A pipeline fastq->heatmaps for an SGE cluster based on hiclib
-
manual_Bonev Public
Finishing distiller processing of Bonev's data manually to avoid re-doing filtering
Shell MIT License UpdatedDec 11, 2018 -
peaktools Public
Forked from sergpolly/peaktoolstools for BEDPE-style peaks
Python MIT License UpdatedNov 2, 2018 -
-
viscm Public
Forked from matplotlib/viscmA tool for visualizing and designing colormaps using colorspacious and matplotlib
Python MIT License UpdatedJun 19, 2018 -