BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding

A library of free open source icons for science illustrations in biology and chemistry

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

TimesFM (Time Series Foundation Model) is a pretrained time-series foundation model developed by Google Research for time-series forecasting.

The uncompromising Python code formatter

LongcallR is a small variant caller for single molecule long-read RNA-seq data

This repository hosts a minimal version of a Python API for BPNet.

Catalogue of pairwise alignment algorithms and benchmarks

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

A battery of methylation tools for PacBio HiFi reads

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

Xron - an omni basecaller for ONT reads.

A 'ggplot2' implement of Venn Diagram.

FASTA and FASTQ parsing in Rust

RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computati…

RawAlign is a real-time raw nanopore read mapper based on the Seed-Filter-Align paradigm as described by Lindegger et al. (https://arxiv.org/abs/2310.05037)

A collection of genomics software tools written in Go (golang).

🦀 A peer-reviewed collection of articles/talks/repos which teach concise, idiomatic Rust.

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Predictive kmer models for development use

an API for intersections of genomic data

Fast FASTX parsing and k-mer methods in Rust

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Wrapper to read fast5, slow5, blow5 and pod5 files.