Lists (6)
Stars
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data, utilizing a ResNet50 model.
V2rayU,基于v2ray核心的mac版客户端,用于科学上网,使用swift编写,支持trojan,vmess,shadowsocks,socks5等服务协议,支持订阅, 支持二维码,剪贴板导入,手动配置,二维码分享等
A GUI client for Windows, support Xray core and v2fly core and others
A simple tool for viewing and reporting base modification frequencies from BAM files
Collect raw signal event samples for k-mers from an event alignment file
BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding
A library of free open source icons for science illustrations in biology and chemistry
"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
TimesFM (Time Series Foundation Model) is a pretrained time-series foundation model developed by Google Research for time-series forecasting.
LongcallR is a small variant caller for single molecule long-read RNA-seq data
This repository hosts a minimal version of a Python API for BPNet.
Catalogue of pairwise alignment algorithms and benchmarks
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
A battery of methylation tools for PacBio HiFi reads
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et…
RawAlign is a real-time raw nanopore read mapper based on the Seed-Filter-Align paradigm as described by Lindegger et al. (https://arxiv.org/abs/2310.05037)
A collection of genomics software tools written in Go (golang).
🦀 A peer-reviewed collection of articles/talks/repos which teach concise, idiomatic Rust.