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1. TRUST4 TRUST4 Public

   Forked from liulab-dfci/TRUST4

   TCR and BCR assembly from RNA-seq data

   C 1

2. DeepTCR DeepTCR Public

   Forked from sidhomj/DeepTCR

   Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

   Jupyter Notebook

3. tcr-bert tcr-bert Public

   Forked from wukevin/tcr-bert

   Large language modeling applied to T-cell receptor (TCR) sequences.

   Jupyter Notebook

4. TCRconv TCRconv Public

   Forked from emmijokinen/TCRconv

   TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.

   Jupyter Notebook

5. bio_embeddings bio_embeddings Public

   Forked from sacdallago/bio_embeddings

   Get protein embeddings from protein sequences

   HTML

6. Single_Cell_Seq_Analysis Single_Cell_Seq_Analysis Public

   Current Testing Pipeline For Running CellRanger and MIXCR Single Cell TCRSeq (WIP)