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72 Open 574 Closed
72 Open 574 Closed
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Issues list

Fatal error: missing assembly is not missing
#674 opened Aug 26, 2024 by afurches
1
SoftClipsToSplitReads error: mem: invalid option -- 'K'
#673 opened Aug 23, 2024 by kostasgalexiou
gridss results MERGE problems with other SV recognition software
#672 opened Aug 23, 2024 by HuangYihang1222
1
NullPointerException during CollectGridssMetricsAndExtractSVReads
#671 opened Aug 19, 2024 by vrohnie
Docker img doesnt work
#669 opened Aug 16, 2024 by saphir746
Running Joint Calling
#667 opened Jul 22, 2024 by HenryMarshall97
Clarify --assembly in documentation
#664 opened Jul 10, 2024 by famosab
Error with gridss_somatic_filter
#663 opened Jun 27, 2024 by Teezi
2
Advice needed in regards to the GRIDSS blacklist
#662 opened Jun 21, 2024 by Teezi
error with simple-event-annotation.R script
#656 opened Mar 26, 2024 by shaghayeghsoudi
2
about VIRUSBREAKEND output
#655 opened Mar 12, 2024 by hidehitofukushima
GRIDSS AnnotateInsertedSequence error with ~2.8 million SV events: htsjdk.samtools.util.RuntimeIOException: Stream closed
#646 opened Oct 31, 2023 by scwatts
VIRUSBREAKEND > failure identifying viral sequences
#644 opened Oct 12, 2023 by josh11351
2
singularity, error on creating temp files
#643 opened Oct 7, 2023 by aheravi
virusbreakend docker image issue: BAM index not found
#639 opened Sep 2, 2023 by ugh-astya
Disable pdf creation/running R scripts at preprocess step
#638 opened Aug 30, 2023 by pruzanov
Error when running gridss_somatic_filter
#635 opened Jul 24, 2023 by kcleal
8
VirusBreakend Running Error
#633 opened Jun 26, 2023 by DAWNkKim
gridss call error
#631 opened Jun 12, 2023 by vitty0513
2
Downloads of VIRUSBreakend reference data FAIL at same spot
#627 opened May 17, 2023 by sbilobram
Cant create docker image - Package 'hmmer' has no installation candidate
#625 opened Apr 18, 2023 by MehmetGoktay
GRIDSS should force DEL-with-INS alignment to prevent inconsistency between asm and direct read calls enhancement
#622 opened Mar 21, 2023 by RobinVanSchendel
2
Inconsistent calling results after rerun with the same set of bam files and parameters
#621 opened Mar 13, 2023 by gseryogin
6
GRIDSS and Illumina Connected Analytics / DRAGEN Integration
#612 opened Feb 13, 2023 by DarioS
BEALN parsing crashes on contigs containing ":" characters bug
#611 opened Jan 25, 2023 by hubentu
@d-cameron
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