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List of surgical tool datasets organised by task.
TTS-GAN: A Transformer-based Time-Series Generative Adversarial Network
Methylation/modified base calling separated from basecalling.
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
A curated list of awesome nanopore analysis tools.
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
The Linux SDK for The Imaging Source cameras.
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
A collection of multi agent environments based on OpenAI gym.
OpenDILab Decision AI Engine. The Most Comprehensive Reinforcement Learning Framework B.P.
Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
[Nature Biomedical Engineering 2023] Decoding surgical activity from videos with a vision transformer
Beautifully designed components that you can copy and paste into your apps. Accessible. Customizable. Open Source.
React components to build charts and dashboards
General toolbox for predicting human retinotopic maps using deepRetinotopy.
Library for KEGG pathway enrichment analysis
Manipulate KEGG networks as NetworkX objects in in Python
A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Vizro is a toolkit for creating modular data visualization applications.
Nuitka is a Python compiler written in Python. It's fully compatible with Python 2.6, 2.7, 3.4-3.12. You feed it your Python app, it does a lot of clever things, and spits out an executable or exte…
Plot the vector graph of attention based text visualisation
[CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.