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@PDB-REDO

PDB-REDO

Tools for macromolecular structure optimisation and analysis

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  1. dssp dssp Public

    Application to assign secondary structure to proteins

    C++ 160 18

  2. alphafill alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

    C++ 89 16

  3. libcifpp libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 28 10

  4. density-fitness density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 5

  5. tortoize tortoize Public

    Application to calculate ramachandran z-scores

    C++

  6. platonyzer platonyzer Public

    CMake

Repositories

Showing 10 of 15 repositories
  • dssp Public

    Application to assign secondary structure to proteins

    PDB-REDO/dssp’s past year of commit activity
    C++ 160 BSD-2-Clause 18 2 0 Updated Sep 26, 2024
  • libpdb-redo Public

    Library containing shared code for various PDB-REDO programs

    PDB-REDO/libpdb-redo’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Sep 23, 2024
  • libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    PDB-REDO/libcifpp’s past year of commit activity
    C++ 28 BSD-2-Clause 10 1 2 Updated Sep 23, 2024
  • tortoize Public

    Application to calculate ramachandran z-scores

    PDB-REDO/tortoize’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Sep 16, 2024
  • pdb-redo-main Public

    core pdb-redo script, tools and data files

    PDB-REDO/pdb-redo-main’s past year of commit activity
    Shell 0 BSD-2-Clause 0 0 0 Updated Sep 5, 2024
  • pdb-redo-session-manager Public

    A session manager for PDB-REDO

    PDB-REDO/pdb-redo-session-manager’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Jul 22, 2024
  • alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

    PDB-REDO/alphafill’s past year of commit activity
    C++ 89 BSD-2-Clause 16 1 0 Updated Apr 24, 2024
  • pdb-redo-archive-manager Public

    An daemon that provides access to archived PDB-REDO entries

    PDB-REDO/pdb-redo-archive-manager’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Apr 9, 2024
  • cif-tools Public

    A suite of programs to manipulate and examine mmCIF files

    PDB-REDO/cif-tools’s past year of commit activity
    C++ 2 BSD-2-Clause 0 0 0 Updated Apr 8, 2024
  • density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    PDB-REDO/density-fitness’s past year of commit activity
    C++ 5 BSD-2-Clause 0 0 0 Updated Apr 8, 2024
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