Merge pull request #1028 from PCMDI/405_durack1_furtherSeaIceDemoTweaks

formatting tweaks; augmented model info; augmented debugging e.g.

doc/jupyter/Demo/Demo_9_seaIceExtent_ivanova.ipynb

@@ -5,7 +5,30 @@
  "id": "acb8d42e",
  "metadata": {},
  "source": [
- "# PCMDI Metrics Package Sea Ice Demo"
+ "# PCMDI Metrics Package Sea Ice Demo\n",
+ "\n",
+ "<div style=\"text-align: right\">\n",
+ "<p>\n",
+ " <img src=\"https://pcmdi.github.io/assets/PCMDI/100px-PCMDI-Logo-NoText-square-png8.png\"\n",
+ " width=\"65\"\n",
+ " style=\"margin-right: 30px\"\n",
+ " title=\"Program for Climate Model Diagnosis and Intercomparison\"\n",
+ " alt=\"Program for Climate Model Diagnosis and Intercomparison\"\n",
+ " >&nbsp;\n",
+ " <img src=\"https://pcmdi.github.io/assets/DOE/480px-DOE_Seal_Color.png\"\n",
+ " width=\"65\"\n",
+ " style=\"margin-right: 30px\"\n",
+ " title=\"United States Department of Energy\"\n",
+ " alt=\"United States Department of Energy\"\n",
+ " >&nbsp;\n",
+ " <img src=\"https://pcmdi.github.io/assets/LLNL/212px-LLNLiconPMS286-WHITEBACKGROUND.png\"\n",
+ " width=\"65\"\n",
+ " style=\"margin-right: 30px\"\n",
+ " title=\"Lawrence Livermore National Laboratory\"\n",
+ " alt=\"Lawrence Livermore National Laboratory\"\n",
+ " >\n",
+ "</p>\n",
+ "</div>"
  ]
  },
  {
@@ -20,7 +43,10 @@
  "Ana Ordonez, Jiwoo Lee, Paul Durack, Peter Gleckler (PCMDI, Lawrence Livermore National Laboratory)\n",
  "\n",
  "**Reference** \n",
- "Ivanova, D. P., P. J. Gleckler, K. E. Taylor, P. J. Durack, and K. D. Marvel, 2016: Moving beyond the Total Sea Ice Extent in Gauging Model Biases. J. Climate, 29, 8965–8987, https://doi.org/10.1175/JCLI-D-16-0026.1. "
+ "Ivanova, D. P., P. J. Gleckler, K. E. Taylor, P. J. Durack, and K. D. Marvel, 2016: Moving beyond the Total Sea Ice Extent in Gauging Model Biases. J. Climate, 29, 8965–8987, https://doi.org/10.1175/JCLI-D-16-0026.1. \n",
+ "\n",
+ "**NOTE** \n",
+ "The installation instruction for the PMP can be found [here](http:https://pcmdi.github.io/pcmdi_metrics/install.html)."
  ]
  },
  {
@@ -201,7 +227,7 @@
  "id": "404ed8d1",
  "metadata": {},
  "source": [
- "# Introducing the PCMDI Metrics Package (PMP) parameter file"
+ "## Introducing the PCMDI Metrics Package (PMP) parameter file"
  ]
  },
  {
@@ -296,7 +322,7 @@
  "id": "dc0d0eeb",
  "metadata": {},
  "source": [
- "# Introducing the PMP driver file"
+ "## Introducing the PMP driver file"
  ]
  },
  {
@@ -424,7 +450,7 @@
  "id": "9bfa9c97",
  "metadata": {},
  "source": [
- "# Running the PMP sea ice demo\n",
+ "## Running the PMP sea ice demo\n",
  "The PMP drivers are run on the command line. In this Jupyter Notebook, we use the bash cell magic function %%bash to run command line functions from the notebook.\n",
  "\n",
  "The PMP sea ice metrics driver call follows the basic format:\n",
@@ -1092,7 +1118,7 @@
  "id": "499d3935",
  "metadata": {},
  "source": [
- "# Working with multiple models"
+ "## Working with multiple models"
  ]
  },
  {
@@ -2694,7 +2720,7 @@
  "id": "f48b3856",
  "metadata": {},
  "source": [
- "Now the resulting bar chart shows three different models with their spread."
+ "Now the resulting bar chart shows three different models with their multiple realization spread."
  ]
  },
  {
@@ -2721,7 +2747,7 @@
  "id": "bc43281a",
  "metadata": {},
  "source": [
- "# Further exploration"
+ "## Further exploration"
  ]
  },
  {
@@ -2731,7 +2757,7 @@
  "source": [
  "Maybe you want to compare more models, or take a closer look at the model data? Here are links to the data for further exploration.\n",
  "\n",
- "As a reminder, data for nine models is available here:\n",
+ "As a reminder, data for nine CMIP6 models (ACCESS-CM2, ACCESS-ESM1-5, CanESM5, CAS-ESM2-0, E3SM-1-0, E3SM-2-0, GFDL-ESM4, MIROC6, with 30 realizations in total across the model suite) is available here:\n",
  "```\n",
  "/p/user_pub/pmp/demo/sea-ice/links_siconc\n",
  "/p/user_pub/pmp/demo/sea-ice/links_area\n",
@@ -2747,36 +2773,36 @@
  "```\n",
  "sea_ice_sector_plots.py\n",
  "sea_ice_line_plots.py\n",
- "```\n"
+ "```"
  ]
  },
  {
  "cell_type": "markdown",
  "id": "f1161f29",
  "metadata": {},
  "source": [
- "# Debugging the LLNL Nimbus binder environment"
+ "## Debugging the LLNL Nimbus binder environment"
  ]
  },
  {
  "cell_type": "markdown",
  "id": "fc4b0ab9",
  "metadata": {},
  "source": [
- "For CAMAS workshop users, if you hit an issue at login `User $id already has a running server`.\n",
+ "For CAMAS workshop users, if you hit an issue at login\n",
+ "\n",
+ "```\n",
+ "Launching server...\n",
+ "Launch attempt 1 failed, retrying...\n",
+ "Launch attempt 2 failed, retrying...\n",
+ "Launch attempt 3 failed, retrying...\n",
+ "User $id already has a running server.\n",
+ "```\n",
  "\n",
  "The fix is to login (using your GitHub credentials) using [https://binder-nimbus.llnl.gov/hub/home](https://binder-nimbus.llnl.gov/hub/home) and select \"Stop My Server\".\n",
  "\n",
  "Once you refresh the start page ([https://binder-nimbus.llnl.gov](https://binder-nimbus.llnl.gov)), login and start again, it should work as expected"
  ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "id": "88955af5",
- "metadata": {},
- "outputs": [],
- "source": []
  }
  ],
  "metadata": {