add coverage for subprocesses (#578)

* add coverage for subprocesses

* adding more binaries to get coverage on

* hoping to fix the pythno3 so issue

* trying to firce py 3.6 otherwise it gets downgraded

* using cdat-forge channel

* ...

.circleci/config.yml

@@ -17,16 +17,16 @@ aliases:
  name: create_conda_env
  environment:
  PKGS: "vcs vcsaddons mesalib matplotlib scipy cia testsrunner 'proj4<5'"
- CHANNELS: "-c cdat/label/nightly -c conda-forge -c cdat -c pcmdi"
+ CHANNELS: "-c cdat/label/nightly -c cdat-forge -c conda-forge -c cdat -c pcmdi"
  command: |
  export PATH=$WORKDIR/miniconda/bin:$PATH
  conda config --set always_yes yes --set changeps1 no
  conda update -y -q conda
  conda config --set anaconda_upload no
  if [[ $PY_VER = "py2" ]]; then
- conda create -q -n $PY_VER $CHANNELS $PKGS $FFMPEG "python<3"
+ conda create -n $PY_VER -q -n $PY_VER $CHANNELS "python<3" $PKGS $FFMPEG
  else
- conda create -q -n $PY_VER $CHANNELS $PKGS $FFMPEG "python>3" $COVERAGE_PKGS
+ conda create -n $PY_VER -q -n $PY_VER $CHANNELS "python>3" $PKGS $FFMPEG $COVERAGE_PKGS
  fi
 
  - &setup_pmp
@@ -59,7 +59,7 @@ aliases:
  - &conda_upload
  name: conda_upload
  environment:
- CHANNELS: "-c conda-forge -c cdat -c pcmdi"
+ CHANNELS: "-c cdat-forge -c conda-forge -c cdat -c pcmdi"
  PKG_NAME: "pcmdi_metrics"
  LABEL: "nightly"
  command: |

.travis.yml

@@ -19,8 +19,10 @@ script:
  - export CDAT_ANONYMOUS_LOG="False"
  - export FFMPEG="ffmpeg"
  - if [ "$TRAVIS_OS_NAME" = "osx" ]; then export FFMPEG="'ffmpeg>4' 'libpng>1.6.34'"; fi
- - conda create -q -n py2 -c cdat/label/nightly -c conda-forge -c cdat -c pcmdi vcs vcsaddons mesalib testsrunner cia "proj4<5" "python<3" scipy $FFMPEG
- - conda create -q -n py3 -c cdat/label/nightly -c conda-forge -c cdat -c pcmdi vcs vcsaddons mesalib testsrunner cia "proj4<5" "python>3" scipy $FFMPEG
+ - conda create -n py2 -c conda-forge/label/gcc7 "python<3"
+ - conda install -q -n py2 -c cdat/label/nightly -c conda-forge -c cdat -c pcmdi vcs vcsaddons mesalib testsrunner cia "proj4<5" scipy $FFMPEG
+ - conda create -n py3 -c conda-forge/label/gcc7 "python>3"
+ - conda install -q -n py3 -c cdat/label/nightly -c conda-forge -c cdat -c pcmdi vcs vcsaddons mesalib testsrunner cia "proj4<5" scipy $FFMPEG
  # Useful for debugging any issues with conda
  - conda info -a
  - source activate py2

tests/coverage.json

@@ -1,3 +1,15 @@
 {
- "include": ["pcmdi_metrics", "pcmdi_metrics/pcmdi"]
+ "include": ["pcmdi_metrics"],
+ "subprocess": ["bin/mean_climate_driver.py", 
+ "bin/pcmdi_compute_climatologies.py",
+ "bin/computeStdDailyMeansWrapped.py",
+ "bin/fourierDiurnalAllGridWrapped.py",
+ "bin/compositeDiurnalStatisticsWrapped.py",
+ "bin/std_of_hourlyvaluesWrappedInOut.py",
+ "bin/std_of_meandiurnalcycWrappedInOut.py",
+ "bin/savg_fourierWrappedInOut.py",
+ "bin/fourierDiurnalGridpoints.py",
+ "bin/std_of_dailymeansWrappedInOut.py",
+ "bin/mpindex_compute.py",
+ "bin/driver_monsoon_sperber.py"]
 }