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@OceanGenomics

Ocean Genomics, Inc.

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  1. mudskipper mudskipper Public

    A tool for projecting genomic alignments to transcriptomic coordinates

    Rust 30 7

  2. gota gota Public

    Forked from go-gota/gota

    Gota: DataFrames and data wrangling in Go (Golang)

    Go 1

  3. RENT RENT Public

    Forked from NMBU-Data-Science/RENT

    Feature selection method based on repeated elastic net.

    Python 1

  4. txomeai txomeai Public

    R wrapper for the txome.ai RNA-Seq analysis API

    R 1

  5. autoparadvisor autoparadvisor Public

    Forked from Kingsford-Group/autoparadvisor

    Python 1

  6. mantis mantis Public

    Forked from splatlab/mantis

    Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    C++ 1

Repositories

Showing 10 of 16 repositories
  • mudskipper Public

    A tool for projecting genomic alignments to transcriptomic coordinates

    OceanGenomics/mudskipper’s past year of commit activity
    Rust 30 BSD-3-Clause 7 13 1 Updated May 28, 2024
  • mantis Public Forked from splatlab/mantis

    Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    OceanGenomics/mantis’s past year of commit activity
    C++ 1 BSD-3-Clause 20 0 0 Updated Mar 5, 2024
  • arriba Public Forked from suhrig/arriba

    Fast and accurate gene fusion detection from RNA-Seq data

    OceanGenomics/arriba’s past year of commit activity
    C++ 0 50 0 1 Updated Sep 5, 2023
  • salmon Public Forked from COMBINE-lab/salmon

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

    OceanGenomics/salmon’s past year of commit activity
    C++ 0 GPL-3.0 160 0 2 Updated Sep 4, 2023
  • autoparadvisor Public Forked from Kingsford-Group/autoparadvisor
    OceanGenomics/autoparadvisor’s past year of commit activity
    Python 1 3 0 0 Updated Aug 25, 2023
  • pufferfish Public Forked from COMBINE-lab/pufferfish

    An efficient index for the colored, compacted, de Bruijn graph

    OceanGenomics/pufferfish’s past year of commit activity
    C++ 0 GPL-3.0 19 0 0 Updated Sep 18, 2022
  • goofys Public Forked from kahing/goofys

    a high-performance, POSIX-ish Amazon S3 file system written in Go

    OceanGenomics/goofys’s past year of commit activity
    Go 0 Apache-2.0 574 0 0 Updated Mar 9, 2022
  • txomeai Public

    R wrapper for the txome.ai RNA-Seq analysis API

    OceanGenomics/txomeai’s past year of commit activity
    R 1 MIT 0 0 0 Updated Feb 17, 2022
  • RENT Public Forked from NMBU-Data-Science/RENT

    Feature selection method based on repeated elastic net.

    OceanGenomics/RENT’s past year of commit activity
    Python 1 BSD-2-Clause 5 0 0 Updated Jan 31, 2022
  • rnaseqtools Public Forked from Kingsford-Group/rnaseqtools

    toolkit to process gtf files

    OceanGenomics/rnaseqtools’s past year of commit activity
    C++ 0 BSD-3-Clause 3 0 0 Updated Jun 15, 2021
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