Commits

Commits on Dec 12, 2023

Adding new learning objective: predict all tokens in next visit in one go. (includes token for time to next visit)
schuemie
committedDec 12, 2023

Commits on Dec 11, 2023

Adding GTP to simulation study pilot
schuemie
committedDec 11, 2023

Commits on Dec 8, 2023

Initial implementation of GPT
schuemie
committedDec 8, 2023

Commits on Dec 7, 2023

Merge pull request #8 from OHDSI/sim_eval
schuemie
committedDec 7, 2023
Fixing another error
schuemie
committedDec 7, 2023
Fix error when training
schuemie
committedDec 7, 2023
Adding simple regression model as baseline
schuemie
committedDec 7, 2023

Commits on Dec 6, 2023

Also grouping results by pretrain_epoch
schuemie
committedDec 6, 2023

Commits on Dec 1, 2023

Fixing evaluation output file
schuemie
committedDec 1, 2023
Forgot to pass through checkpoint_every in evaluator.
schuemie
committedDec 1, 2023
Merge branch 'sim_eval' of https://github.com/OHDSI/Apollo into sim_eval
schuemie
committedDec 1, 2023
Add checkpoint_every option to save disk space
schuemie
committedDec 1, 2023
Requiring visit concept tokenizer when using visit concept embedding

Admin_mschuemi
authored and
Admin_mschuemi
committedDec 1, 2023

Commits on Nov 30, 2023

Attempting to fix GA build
schuemie
committedNov 30, 2023
Fix unit tests
schuemie
committedNov 30, 2023
Defining a pilot simulation study
schuemie
committedNov 30, 2023

Commits on Nov 28, 2023

Fix typo
schuemie
committedNov 28, 2023
Adding option to select specific epoch of pretrained model, and limit number of batches in fine-tuned model
schuemie
committedNov 28, 2023

Commits on Nov 23, 2023

Combining evaluation results across runs into single CSV
schuemie
committedNov 23, 2023

Commits on Nov 21, 2023

Adding support for MPS
schuemie
committedNov 21, 2023

Commits on Nov 17, 2023

More work on seperating inputs from learning objectives
schuemie
committedNov 17, 2023

Commits on Nov 14, 2023

Switcing from ini to yaml config files. Implementing meta-evaluation (evaluation across many model settings)
schuemie
committedNov 14, 2023
Not writing configs and tokenizers when evaluating model only.
schuemie
committedNov 14, 2023

Commits on Nov 10, 2023

Removing debug code
schuemie
committedNov 10, 2023
Implemented fine-tuning and testing of single prediction example
schuemie
committedNov 10, 2023
Allowing user to limit number of simulated prediction tasks
schuemie
committedNov 10, 2023
Applying settings pattern to simulator
schuemie
committedNov 10, 2023

Commits on Oct 30, 2023

Switching label prediction to logistic regression. Computing AUC, AUPRC and Brier score
schuemie
committedOct 30, 2023
Work on simulation evaluation
schuemie
committedOct 30, 2023

Commits on Oct 27, 2023

Passing forward settings used to generate model, to avoid mistakes when fine-tuning
schuemie
committedOct 27, 2023

Commits on Sep 22, 2023

Adding (optional) embedding concatenation as alternative to sum

Admin_mschuemi
authored and
Admin_mschuemi
committedSep 22, 2023
Fixing typo in name of visit token decoder

Admin_mschuemi
authored and
Admin_mschuemi
committedSep 22, 2023

Commits on Sep 15, 2023

Added missing parameter to TimeEmbedding

Admin_mschuemi
authored and
Admin_mschuemi
committedSep 15, 2023
Minor changes

Admin_mschuemi
authored and
Admin_mschuemi
committedSep 15, 2023
Adding ability to use pre-trained model

Admin_mschuemi
authored and
Admin_mschuemi
committedSep 15, 2023