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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 854 442

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 206 73

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 258 126

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 37 32

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 78 57

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 181 88

Repositories

Showing 10 of 297 repositories
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 12 Apache-2.0 15 3 0 Updated Jul 11, 2024
  • DataQualityDashboard Public

    A tool to help improve data quality standards in observational data science.

    OHDSI/DataQualityDashboard’s past year of commit activity
    JavaScript 128 Apache-2.0 91 54 9 Updated Jul 11, 2024
  • Ares Public

    A Research Exploration System

    OHDSI/Ares’s past year of commit activity
    Vue 12 Apache-2.0 3 37 2 Updated Jul 11, 2024
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 7 Apache-2.0 1 12 0 Updated Jul 10, 2024
  • EyeCareVisionWG Public

    OHDSI Eye Care and Vision Working Group

    OHDSI/EyeCareVisionWG’s past year of commit activity
    TypeScript 3 Apache-2.0 3 1 0 Updated Jul 10, 2024
  • ClinicalCharacteristics Public

    [under development] table shell approach to OMOP characterization

    OHDSI/ClinicalCharacteristics’s past year of commit activity
    R 0 Apache-2.0 0 17 0 Updated Jul 10, 2024
  • Strategus Public

    [Under development] An R packages for coordinating and executing analytics using HADES modules

    OHDSI/Strategus’s past year of commit activity
    R 6 10 33 5 Updated Jul 10, 2024
  • drat Public

    drat repository for OHDSI R packages

    OHDSI/drat’s past year of commit activity
    5 7 0 0 Updated Jul 10, 2024
  • CohortIncidence Public

    Contains the Java and R assets to perform Incidence calculations on a CDM

    OHDSI/CohortIncidence’s past year of commit activity
    R 5 2 6 0 Updated Jul 10, 2024
  • StandardizedAnalysisAPI Public

    Interfaces for standardized OHDSI analyses (Cohort Characterization, TxPathway, Incidence Rate etc.) used as an exchange standard or implementation guide

    OHDSI/StandardizedAnalysisAPI’s past year of commit activity
    Java 5 Apache-2.0 4 2 4 Updated Jul 10, 2024