Lightweight converter between hic and cool contact matrices.

Mastering Embedded Linux Programming Third Edition, published by Packt

PySDR.org textbook source material, feel free to post issues/PRs

Summary of each chapter of the book- Introduction of Statistical Learning (ISL), along with Python code & data.

Helper application for Linux distributions serving as a kind of "entry point" for running and integrating AppImages

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

The book about decoding Mode-S and ADS-B data

Multithreaded deterministic minimalist Verlet solver

MACS -- Model-based Analysis of ChIP-Seq

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

HiCorr: a Hi-C data bias-correction pipeline

SSTV Decoder

chromatin traces visualization tool

GENome Organisation Visual Analytics

Chromosome polymer simulations and in silico capture experiments

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Lime: Explaining the predictions of any machine learning classifier

collect dump1090 flight positions using socket30003 and save them as csv

Cluster single cells and analyze cell clade relationships with colorful visualizations.

WDL RNA Seq

VS Code in the browser

Workflow Description Language - Specification and Implementations

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

Collection of various algorithms in mathematics, machine learning, computer science, physics, etc implemented in C for educational purposes.

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep lear…

Software to turn the RTL2832U into an SDR