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Segmentation configuration file fix #482

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Mar 3, 2020
Merged

Segmentation configuration file fix #482

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111fec8
Update default_multimodal_segmentation_eval.ini
eschnider Mar 3, 2020
7c414ad
Update config.ini
eschnider Mar 3, 2020
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2 changes: 1 addition & 1 deletion config/default_multimodal_segmentation_eval.ini
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Expand Up @@ -68,7 +68,6 @@ spatial_window_size = (64, 64, 64)
[EVALUATION]
save_csv_dir = ./NiftyNetTestEval
evaluations = dice,jaccard,false_positive_rate,positive_predictive_values,n_pos_ref,n_pos_seg
evaluation_units = foreground


############################ custom configuration sections
Expand All @@ -82,3 +81,4 @@ weight = T1
output_prob = False
num_classes = 5
label_normalisation = False
evaluation_units = foreground
2 changes: 1 addition & 1 deletion demos/unet_histology/config.ini
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Expand Up @@ -51,7 +51,6 @@ dataset_to_infer = inference
[EVALUATION]
save_csv_dir = ./eval.csv
evaluations = dice
evaluation_units = label

############################ Application Configuration
[SEGMENTATION]
Expand All @@ -61,3 +60,4 @@ sampler = label
label_normalisation = False
output_prob = False
num_classes = 2
evaluation_units = label