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@NextRNAtx

NextRNA Therapeutics

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  1. wf-nf-rnaseq wf-nf-rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow

  2. wf-nf-hello wf-nf-hello Public

    Forked from nextflow-io/hello

    Classic hello world script in Nextflow language

    Nextflow

  3. clipseq clipseq Public

    Forked from nf-core/clipseq

    CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

    Nextflow 2

  4. package-r-nextrnaColors package-r-nextrnaColors Public

    Limited package to enable easy plotting of data using ggplot2 and NextRNA corporate colors

    R

  5. wf-nf-smrnaseq wf-nf-smrnaseq Public

    Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    Nextflow

  6. RNAlight RNAlight Public

    Forked from YangLab/RNAlight

    a machine learning model to identify nucleotide features determining RNA subcellular localization

    Jupyter Notebook

Repositories

Showing 10 of 11 repositories
  • leafcutter Public Forked from davidaknowles/leafcutter

    Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

    NextRNAtx/leafcutter’s past year of commit activity
    R 0 Apache-2.0 115 0 0 Updated Jul 24, 2023
  • package-r-nextrnaColors Public

    Limited package to enable easy plotting of data using ggplot2 and NextRNA corporate colors

    NextRNAtx/package-r-nextrnaColors’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Apr 13, 2023
  • wf-nf-clipseq_single_end Public Forked from NextRNAtx/clipseq

    CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

    NextRNAtx/wf-nf-clipseq_single_end’s past year of commit activity
    Nextflow 0 MIT 27 0 0 Updated Mar 9, 2023
  • wf-nf-smrnaseq Public Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    NextRNAtx/wf-nf-smrnaseq’s past year of commit activity
    Nextflow 0 MIT 126 0 0 Updated Dec 16, 2022
  • nf-training-advanced Public Forked from seqeralabs/nf-training-advanced

    Customer workshop materials

    NextRNAtx/nf-training-advanced’s past year of commit activity
    Nextflow 0 8 0 0 Updated Dec 14, 2022
  • clipseq Public Forked from nf-core/clipseq

    CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

    NextRNAtx/clipseq’s past year of commit activity
    Nextflow 0 MIT 27 0 0 Updated Dec 1, 2022
  • chipseq Public Forked from nf-core/chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

    NextRNAtx/chipseq’s past year of commit activity
    Nextflow 0 MIT 149 0 0 Updated Oct 6, 2022
  • RNAlight Public Forked from YangLab/RNAlight

    a machine learning model to identify nucleotide features determining RNA subcellular localization

    NextRNAtx/RNAlight’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Sep 26, 2022
  • FebRNA Public Forked from Tan-group/FebRNA

    FebRNA: an automated fragment-ensemble-based model for building RNA 3D structures.

    NextRNAtx/FebRNA’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Jul 19, 2022
  • wf-nf-rnaseq Public Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    NextRNAtx/wf-nf-rnaseq’s past year of commit activity
    Nextflow 0 MIT 712 0 0 Updated Jun 4, 2021
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