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NU Pulmonary

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  1. 2020_Grant 2020_Grant Public

    Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper

    Jupyter Notebook 8 4

  2. scarches-covid-reference scarches-covid-reference Public

    Build a reference model for COVID-positive BAL fluid scRNA-seq samples from Grant et al., 2020 with scArches

    Jupyter Notebook 7

  3. stoeger_et_al_2022_transcriptome_imbalance stoeger_et_al_2022_transcriptome_imbalance Public

    Code accompanying manuscript

    Jupyter Notebook 6 2

  4. Reyfman2018 Reyfman2018 Public

    This repository contains R code used to analyze bulk and single-cell RNA-seq data published in Reyfman et al., AJRCCM, 2018.

    R 5 6

  5. utils utils Public

    Collection of useful scripts, largely for sequence analysis

    R 4 4

  6. Doublehit_Human_scRNA_Analysis Doublehit_Human_scRNA_Analysis Public

    Codes and analysis workflow for integrating human scRNA-seq data from six different studies to reveal age-related signatures.

    R 3 1

Repositories

Showing 10 of 24 repositories
  • utils Public

    Collection of useful scripts, largely for sequence analysis

    NUPulmonary/utils’s past year of commit activity
    R 4 4 4 (2 issues need help) 0 Updated Jul 18, 2024
  • 2024_Fenske_Peltekian Public
    NUPulmonary/2024_Fenske_Peltekian’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 17, 2024
  • 2024_Markov_Ren_Senkow Public
    NUPulmonary/2024_Markov_Ren_Senkow’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 26, 2024
  • 2023_Grant_Poor Public

    Public respository for the manuscript: "Prolonged exposure to lung-derived cytokines is associated with inflammatory activation of microglia in patients with COVID-19

    NUPulmonary/2023_Grant_Poor’s past year of commit activity
    R 1 MIT 0 0 0 Updated May 24, 2024
  • seqextendeR Public

    A collection of tools and extensions for bulk and single-cell RNA-seq analysis

    NUPulmonary/seqextendeR’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 9, 2024
  • which_genome Public

    Identify genome build from a list of genes

    NUPulmonary/which_genome’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 7, 2023
  • Bailey_Puritz_RPRA_2023 Public

    Code base for Bailey, Puritz, et al. "Expansion of profibrotic monocyte-derived alveolar macrophages in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19" (2023)

    NUPulmonary/Bailey_Puritz_RPRA_2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 3, 2023
  • nupulmonary.org Public

    Our website

    NUPulmonary/nupulmonary.org’s past year of commit activity
    HTML 0 1 0 0 Updated Aug 1, 2023
  • 2020_Grant Public

    Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper

    NUPulmonary/2020_Grant’s past year of commit activity
    Jupyter Notebook 8 4 0 0 Updated Jul 18, 2023
  • stoeger_et_al_2022_transcriptome_imbalance Public

    Code accompanying manuscript

    NUPulmonary/stoeger_et_al_2022_transcriptome_imbalance’s past year of commit activity
    Jupyter Notebook 6 2 0 0 Updated Oct 14, 2022
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