Bring GFS.v16 features back to develop branch (#196)

* update post lib to upp lib and add dzmin change in fv3 dycore
* add dycore change #35
* merge with top of dev/emc dycore branch
* remove duplicate read_data in fms_mod in external_ic.F90

CMakeLists.txt

@@ -189,7 +189,7 @@ target_link_libraries(fv3atm PUBLIC nemsio::nemsio
  esmf)
 
 if(INLINE_POST)
- target_link_libraries(fv3atm PUBLIC nceppost::nceppost)
+ target_link_libraries(fv3atm PUBLIC upp::upp)
 endif()
 
 if(OpenMP_Fortran_FOUND)

io/CMakeLists.txt

@@ -38,7 +38,7 @@ target_link_libraries(io PRIVATE fms
  ipd)
 
 if(INLINE_POST)
- target_link_libraries(io PRIVATE nceppost::nceppost)
+ target_link_libraries(io PRIVATE upp::upp)
 endif()
 
 if(CCPP)

io/makefile

@@ -66,7 +66,7 @@ $(LIBRARY): $(OBJS)
 FV3GFS_io.o: FV3GFS_io.F90
  $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) -c FV3GFS_io.F90
 post_nems_routines.o: post_nems_routines.F90
- $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) -I$(POST_INC) -c post_nems_routines.F90
+ $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) -I$(UPP_INC) -c post_nems_routines.F90
 module_write_nemsio.o: module_write_nemsio.F90
  $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) $(NEMSIOINC) -c module_write_nemsio.F90
 module_write_netcdf.o: module_write_netcdf.F90
@@ -80,7 +80,7 @@ module_write_internal_state.o: module_write_internal_state.F90
 module_wrt_grid_comp.o: module_wrt_grid_comp.F90
  $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) -c module_wrt_grid_comp.F90
 post_gfs.o: post_gfs.F90
- $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) -I$(POST_INC) -c post_gfs.F90
+ $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) -I$(UPP_INC) -c post_gfs.F90
 post_gfs_stub.o: post_gfs_stub.F90
  $(FC) $(CPPDEFS) $(CPPFLAGS) $(FPPFLAGS) $(FFLAGS) $(OTHERFLAGS) $(OTHER_FFLAGS) $(ESMF_INC) -c post_gfs_stub.F90