A mindmap summarising Deep Learning concepts.

The tools for estimating methylation heterogeneity

The simplest, fastest repository for training/finetuning medium-sized GPTs.

Grok open release

Deep probabilistic analysis of single-cell and spatial omics data

This repository contains all code used for the Human Lung Cell Atlas project.

Biological foundation modeling from molecular to genome scale

A tool for timing complex copy number gains in cancer.

Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.

A Great Collection of Deep Learning (e)Books

A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

Official Code for Stable Cascade

💯 Curated coding interview preparation materials for busy software engineers

An extremely fast Python package installer and resolver, written in Rust.

A high-throughput and memory-efficient inference and serving engine for LLMs

resources for bioinformatics education

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

A Python package for causal inference in quasi-experimental settings

Causal Inference in R: A book!

Build AI Assistants with memory, knowledge and tools.

Official implementation of MetaTree: Learning a Decision Tree Algorithm with Transformers

Fast and memory-efficient exact attention

A tool for exploring each layer in a docker image

Executes commands in response to file modifications

Notes and articles on software development. All content is original. Most of the content reflects the way that our current software team operates.

Jasmine: SV Merging Across Samples

Make sankey, alluvial and sankey bump plots in ggplot

Tabular Deep Learning Library for PyTorch

Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.