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An R-focused pipeline toolkit for reproducibility and high-performance computing
rrtools: Tools for Writing Reproducible Research in R
Make sankey, alluvial and sankey bump plots in ggplot
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
An inversion of renv for low effort reproducible R package libraries
Analysis pipeline for cancer sequencing data
🎯 Human transcription factor target genes from 6 databases in convenient R format.
Battenberg R package for subclonal copynumber estimation
An R package for hierarchical clustering with p-values
Dirichlet Process based methods for subclonal reconstruction of tumours
Code for mutational timing of gains and signatures analysis
More extensive tools for bayesian epiallele detection (beta version)