A fast streaming JSON parsing library in C.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

C library for high-throughput sequencing data formats

BWK awk modified for biological data

Interval data structure

software tools for haplotype assembly from sequence data

Benchmarking programming languages/implementations for common tasks in Bioinformatics

Microassembly based somatic variant caller for NGS data

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Flexible genotype query among 30,000+ samples whole-genome

A C library for handling bigWig files

Numerical Encoding for Human Genetic Variants

allele specific DNA methylation haplotype region