This repository contains the documentation for the use of the internal AI for Oncology cluster Kosmos.

To install the necessary requirements for building and viewing the documentation, follow these steps:

1. Clone this repository to your local machine:

   git clone [https://github.com/your-username/kosmos-documentation.git](https://github.com/NKI-AI/kosmos-documentation)

2. Navigate to the cloned repository:

   cd kosmos-documentation

3. Install the required dependencies using pip:

   pip install -r requirements.txt

   This will install the sphinx_book_theme package, which is used to handle the rendering of the RST files.

Once the requirements are installed, you can build the documentation using Sphinx. To build the documentation, run the following command:

make uploaddocs

This commands will first clean HTML and other files under the directory kosmos if previously make uploaddocs was performed. After that it will generate the HTML files for the documentation in the kosmos directory.

Generated documentation can be found at the website https://docs.aiforoncology.nl/kosmos/.