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Implements the Simulating Optimal FUNctioning framework for site-scale simulations of ecosystem processes, including model calibration. It contains Fortran 90 modules for the P-model, SPLASH, and BiomeE models.

geco-bern.github.io/rsofun/

License

GPL-3.0 license
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rsofun

An R Simulating Optimal FUNctioning (RSOFUN) framework for site-scale simulations of ecosystem processes. The package contains the following modules:

  • P-model for leaf-level acclimation of photosynthesis from Stocker et al. (2019).
  • SPLASH for bioclimatic variables, including the surface radiation budget and the soil water balance from Davis et al. (2017).
  • BiomeE for comprehensive simulations of ecosystem carbon and water cycling, tree growth, and tree cohort-explicit forest dynamics following the Perfect Plasticity Approximation, from Weng et al., (2015).

Installation

Stable release

To install the current stable release use a CRAN repository:

WARNING: rsofun is not currently available on CRAN. We're working on it. Until it's available again, the command below will not work.

install.packages("rsofun")
library("rsofun")

Development release

To install the latest development release of the package run the following commands to install rsofun directly from GitHub:

if(!require(remotes)){install.packages("remotes")}
remotes::install_github("geco-bern/rsofun")
library("rsofun")

NOTE: Installing from GitHub requires compilation of Fortran and C source code contained in {rsofun}. To enable compiling source code, install Rtools on Windows, or Xcode and the GNU Fortran compiler on Mac (see also 'Mandatory tools' here). On Linux, the gfortran compiler is usually installed already.

Vignettes are not rendered by default, if you want to include additional documentation please use:

if(!require(remotes)){install.packages("remotes")}
remotes::install_github("geco-bern/rsofun", build_vignettes = TRUE)
library("rsofun")

Use