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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.4k 400

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 478 248

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 358 242

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 193 46

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 156 61

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

Showing 10 of 20 repositories
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Nov 14, 2024
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 478 GPL-3.0 248 22 2 Updated Nov 13, 2024
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 156 GPL-3.0 61 11 1 Updated Nov 4, 2024
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,385 BSD-3-Clause 400 32 (1 issue needs help) 11 Updated Oct 30, 2024
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 47 BSD-3-Clause 22 8 3 Updated Oct 27, 2024
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 193 GPL-3.0 46 1 0 Updated Oct 19, 2024
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 27, 2024
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 358 GPL-3.0 242 107 (1 issue needs help) 7 Updated Jun 19, 2024
  • stringer-pachitariu-et-al-2018a Public

    Recordings of 10k neurons during spontaneous behaviors

    MouseLand/stringer-pachitariu-et-al-2018a’s past year of commit activity
    MATLAB 50 15 2 2 Updated Mar 22, 2024
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 12 GPL-3.0 2 0 0 Updated Nov 16, 2023
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