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nwc: add hessian file; minor testing updates #177

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merged 27 commits into from
Dec 5, 2019
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vivacebelles
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@vivacebelles vivacebelles commented Nov 18, 2019

Description

Pulling in the hessian file for NWChem jobs. Clumped in with additional testing on QCDB for properties

Todos

Notable points that this PR has either accomplished or will accomplish.

  • [x ] Added hessian file to keep when running via NWChem

Questions

Status

  • Changelog updated
  • [ x] Ready to go

#only pulling Debye
psivar[f'{mbpt_plain} DIPOLE X'] = mobj2.group(2)
psivar[f'{mbpt_plain} DIPOLE Y'] = mobj2.group(4)
psivar[f'{mbpt_plain} DIPOLE Z'] = mobj2.group(6)
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Debye is consistent for now -- will switch to a.u. later.

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lgtm-com bot commented Nov 18, 2019

This pull request introduces 1 alert when merging 848cb14 into 2d1cc42 - view on LGTM.com

new alerts:

  • 1 for Syntax error

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codecov bot commented Nov 18, 2019

Codecov Report

Merging #177 into master will increase coverage by 5.68%.
The diff coverage is n/a.

@@ -61,6 +61,9 @@ def muster_modelchem(method: str, derint: int, use_tce: bool) -> Tuple[str, Dict
mdccmd = f"task tce {runtyp}\n\n"
opts["tce__ccsd(t)"] = True
else:
mdccmd = f"task ccsd(t) {runtyp}\n\n"
mdccmd = f'task ccsd(t) {runtyp}\n\n'
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just a note that they'll probably roll out black which is a different formatter from yapf, and it changes all your ' to ".

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LGTM, one note is that we did roll out black please type make format from the base folder to automatically apply linting.

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dgasmith commented Dec 3, 2019

Can you rebase and run black over this?

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lgtm-com bot commented Dec 3, 2019

This pull request introduces 1 alert when merging 5c3049b into f9fea80 - view on LGTM.com

new alerts:

  • 1 for Variable defined multiple times

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Rebased and formatted with black completed.

@loriab loriab merged commit db6eb74 into MolSSI:master Dec 5, 2019
muammar added a commit to muammar/QCEngine that referenced this pull request Dec 9, 2019
* upstream/master:
  Qchem: SCF-> Total energy in the final basis set for correctly catching -D, etc.
  Qchem: PR comments
  Testing: Finishes up using conversion on several straglers
  Testing: Applies new using strategy to all files
  Testing: New using strategy
  Psi4: Fixes issue with HF3c execution
  PR comments
  PR comments: parse logfile for fields not available in QCSCR also, fix dipole parsing
  nwc: add hessian file; minor testing updates (MolSSI#177)
  PR comments: use qcel's NUMBER regex also, blacken and isort
  fix test until next qcel version
  PR comments: added ability to ingest logfile+QCSCR
  Blacken QCEngine
  PR comments: rename input, refactor NUMBER into regex snippet file
  Update QCENGINE_RECORDS_COMMIT
  Update QCENGINE_RECORDS_COMMIT
  Qchem: add tests for log parser for archival data
  Qchem: add log parser for archival data
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3 participants