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1. MetONTIIME MetONTIIME Public

   A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

   Nextflow 78 17

2. ONTrack2 ONTrack2 Public

   A Nextflow MinION-based pipeline for tracking species biodiversity

   R 6

3. MetaBlast MetaBlast Public

   A Metagenomic pipeline for parallel Blast analysis and report generation.

   Shell 9 1

4. CharONT2 CharONT2 Public

   A NextFlow ONT-based pipeline for characterizing long genomic regions

   R 6 1

5. UMInator UMInator Public

   A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs

   R 6 3

6. nf-m6anet nf-m6anet Public

   A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data

   Nextflow 6