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ci: refactor workflows, add tests, bump action versions, update docs (#…
…17) * refactor workflows * create code.json in build_executables.py * move scripts from .github/common to /scripts * add job for modflow6 integration testing * use GITHUB_TOKEN to avoid rate limits * update paths to use pathlib * unpin/upgrade actions * update dev docs
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,125 @@ | ||
| name: Integration testing | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - develop* | ||
| - ci-diagnose* | ||
| paths-ignore: | ||
| - '**.md' | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| - develop | ||
| paths-ignore: | ||
| - '**.md' | ||
| schedule: | ||
| - cron: '0 6 * * *' # run at 6 AM UTC every day | ||
| jobs: | ||
| test_modflow: | ||
| name: MODFLOW 6 integration tests | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ ubuntu-20.04, macos-latest, windows-2019 ] | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
|
|
||
| - name: Checkout action | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| path: executables | ||
|
|
||
| - name: Checkout modflow6 | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| repository: MODFLOW-USGS/modflow6 | ||
| path: modflow6 | ||
|
|
||
| - name: Setup Micromamba | ||
| uses: mamba-org/provision-with-micromamba@main | ||
| with: | ||
| environment-file: modflow6/environment.yml | ||
|
|
||
| - name: Setup ifort | ||
| uses: modflowpy/install-intelfortran-action@v1 | ||
| # with: | ||
| # path: ${{ runner.os != 'Windows' && 'bin' || 'C:\Program Files (x86)\Intel\oneAPI' }} | ||
|
|
||
| - name: Fix Micromamba path (Windows) | ||
| if: runner.os == 'Windows' | ||
| shell: pwsh | ||
| run: | | ||
| # https://github.com/modflowpy/install-intelfortran-action#conda-scripts | ||
| $mamba_bin = "C:\Users\runneradmin\micromamba-root\envs\modflow6\Scripts" | ||
| echo $mamba_bin | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | ||
| - name: Build modflow6 (Linux & Mac) | ||
| working-directory: modflow6 | ||
| run: | | ||
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | ||
| meson compile -v -C builddir | ||
| meson install -C builddir | ||
| # - name: Show meson build log | ||
| # run: cat modflow6/builddir/meson-logs/meson-log.txt | ||
|
|
||
| - name: Update FloPy | ||
| working-directory: modflow6/autotest | ||
| run: python update_flopy.py | ||
|
|
||
| - name: Get executables | ||
| if: runner.os != 'Windows' | ||
| working-directory: modflow6/autotest | ||
| env: | ||
| GITHUB_TOKEN: ${{ github.token }} | ||
| run: | | ||
| pytest -v -s get_exes.py | ||
| sudo rm -rf ../bin/downloaded/* | ||
| - name: Get executables | ||
| if: runner.os == 'Windows' | ||
| shell: pwsh | ||
| working-directory: modflow6/autotest | ||
| env: | ||
| GITHUB_TOKEN: ${{ github.token }} | ||
| run: | | ||
| pytest -v -s get_exes.py | ||
| rm -Force ../bin/downloaded/* | ||
| - name: Show pymake version | ||
| run: | | ||
| pip show mfpymake | ||
| python -c "import pymake; print(pymake.__version__)" | ||
| - name: Build executables | ||
| if: runner.os != 'Windows' | ||
| working-directory: executables/scripts | ||
| run: python build_executables.py -p ../../modflow6/bin/downloaded | ||
|
|
||
| - name: Build executables | ||
| if: runner.os == 'Windows' | ||
| shell: cmd | ||
| working-directory: executables/scripts | ||
| run: python build_executables.py -p ../../modflow6/bin/downloaded | ||
|
|
||
| # - name: Build executables | ||
| # uses: nick-fields/retry@v2 | ||
| # with: | ||
| # timeout_minutes: 40 | ||
| # max_attempts: 5 | ||
| # command: | | ||
| # cd modflow6/bin/downloaded | ||
| # python ../../../scripts/build_executables.py | ||
|
|
||
| - name: Set executable permission | ||
| if: runner.os != 'Windows' | ||
| working-directory: modflow6/bin/downloaded | ||
| run: sudo chmod +x * | ||
|
|
||
| - name: Test modflow6 | ||
| working-directory: modflow6/autotest | ||
| run: pytest -v -n auto --durations 0 |
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