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University of Colorado Anschutz Medical Campus
- Aurora, Colorado
- https://orcid.org/0000-0003-2441-5836
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quarto-web Public
Forked from quarto-dev/quarto-webQuarto website
JavaScript Other UpdatedJul 25, 2024 -
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TALON Public
Forked from mortazavilab/TALONTechnology agnostic long read analysis pipeline for transcriptomes
Python MIT License UpdatedJan 18, 2024 -
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fuzzy-fastq Public
A bioinformatics script for matching DNA sequences with predefined barcodes and adapters using a mismatch threshold, then visualizing the distribution of matches in FASTQ files.
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htmltabs Public
A CLI tool to merge HTML files into a single HTML file with tabs.
Python UpdatedOct 26, 2023 -
fastq-barcode-check Public
Rust code to check FASTQ reads for the presence of barcode sequences.
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pipeline-transcriptome-de Public
Forked from nanoporetech/pipeline-transcriptome-dePipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Python Other UpdatedFeb 7, 2023 -
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geneplot Public
Forked from gonzalezibeas/geneplotPython GNU General Public License v3.0 UpdatedDec 28, 2022 -
mlktools Public
Various tools to support day to day processing and workflows
Python The Unlicense UpdatedOct 20, 2022 -
cookiecutter-data-snake Public
Forked from martibosch/cookiecutter-data-snakeReproducible data science template using Python, snakemake, mamba and more
Python MIT License UpdatedSep 15, 2022 -
cookiecutter-snakemake Public
Forked from simpsonlab/cookiecutter-snakemakeA cookiecutter template for snakemake projects used in the Simpson Lab
Python UpdatedJul 29, 2022 -
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cookiecutter-reproducible-research Public
Forked from timtroendle/cookiecutter-reproducible-researchA cookiecutter template for reproducible research projects using Python, Snakemake, and Pandoc.
CSS MIT License UpdatedMar 25, 2022 -
snakemake-pipeline-template Public
Forked from alexhbnr/snakemake-pipeline-templateCookiecutter template for Snakemake pipelines
Python MIT License UpdatedMar 15, 2022 -
STARCH Public
Forked from raphael-group/STARCHSpatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
Python MIT License UpdatedJan 19, 2022 -
rstudio-m1 Public
Forked from Tazovsky/rstudio-m1Dockerfile for RStudio Server on M1
Dockerfile UpdatedJan 13, 2022 -
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docker-scrnaseq-rstudio Public
Docker image for scRNA-seq analysis using RStudio.
Dockerfile UpdatedDec 3, 2021 -
docker-scrnaseq-jupyter Public
Docker image for scRNA-seq analysis using Jupyter Lab with kernels for both R and Python.
Dockerfile UpdatedNov 18, 2021 -
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combine_pdfs Public
Python script to combine multiple pdfs into a single pdf.
Python MIT License UpdatedSep 9, 2021 -
gene_annotate Public
Tool to annotate csv or tsv files containing a column of gene symbols. Outputs formal gene name and protein function/class to table.
Python MIT License UpdatedSep 9, 2021 -
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10X_snakepipe Public
Forked from maxplanck-ie/10X_snakepipeA snakemake pipeline for 10X genomics cellranger
Python UpdatedAug 20, 2021 -
brzezinski-lab-tools Public
Collection of quick tools for repetitive tasks in the Brzezinski Lab. Also serves as a demo for deploying a Python app from GitHub to Heroku.
Python UpdatedAug 13, 2021 -
py-enhancer-scanner Public
python implementation of an API to facilitate the scanning, integrating, and visualizing genomic track data for regions of interest in gene regulation
Python MIT License UpdatedAug 11, 2021 -
streamlit-nginx Public
Forked from lballore/streamlit-nginxstreamlit-nginx is a Docker image with Streamlit and Nginx for web-based demo applications in Python 3.6 and above, in a single container.
Dockerfile MIT License UpdatedApr 28, 2021