Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update derived concepts for mimic-iv #1336

Merged
merged 10 commits into from
Jul 11, 2022
Merged

Update derived concepts for mimic-iv #1336

merged 10 commits into from
Jul 11, 2022

Conversation

alistairewj
Copy link
Member

@alistairewj alistairewj commented Jul 11, 2022

This PR updates the derived concepts to work for MIMIC-IV v2.0. It also fixes some incompatibilities in trying to run the convert_bigquery_to_postgres.sh script on Mac OS X as it has BSD sed and bash 3.x by default (as opposed to GNU sed and bash 4.x+ on Ubuntu).

Almost all concepts are materially unchanged, but file changes exist, as the schema prefix has been changed from mimic_ to mimiciv_. The only real change is from ethnicity to race in the icustay_detail table.

@alistairewj alistairewj merged commit f7b3ce9 into main Jul 11, 2022
@alistairewj alistairewj deleted the mimiciv_v2_update branch July 11, 2022 14:50
@alistairewj alistairewj mentioned this pull request Jul 13, 2022
1 task
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant