Update derived concepts for mimic-iv #1336
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR updates the derived concepts to work for MIMIC-IV v2.0. It also fixes some incompatibilities in trying to run the
convert_bigquery_to_postgres.sh
script on Mac OS X as it has BSD sed and bash 3.x by default (as opposed to GNU sed and bash 4.x+ on Ubuntu).Almost all concepts are materially unchanged, but file changes exist, as the schema prefix has been changed from
mimic_
tomimiciv_
. The only real change is fromethnicity
torace
in the icustay_detail table.