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Formalizing and benchmarking open problems in single-cell genomics

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Open Problems in Single-Cell Analysis

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Formalizing and benchmarking open problems in single-cell genomics.

Visit the Open Problems Website.

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The team

Core:

  • Scott Gigante (@scottgigante)
  • Daniel Burkhardt (@dburkhardt)
  • Malte Luecken (@LuckyMD)
  • Angela Pisco (@aopisco)
  • Olga Botvinnik (@olgabot)

Task authors (alphabetically):

  • Emma Dann (@emdann) - Differential abundance
  • Wes Lewis (@weslewis) - Differential abundance and data denoising
  • Mohammad Lotfallahi (@M0hammadL) - Label projection task
  • Qian Qin (@qinqian) - Predicting gene expression from chromatin accessibility
  • Daniel Strobl (@danielStrobl) - Batch integration
  • Michael Vinyard (@mvinyard) - Stress preservation in dimensionality reduction
  • Florian Wagner (@flo-compbio) - Data denoising

Supervision (alphabetically):

  • Smita Krishnaswamy, Yale
  • Fabian Theis, Helmholtz Munich

Chan Zuckerberg Initiative Support (alphabetically):

  • Jonah Cool
  • Fiona Griffin

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Formalizing and benchmarking open problems in single-cell genomics

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