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Issues list

Update Samui Browser & VistoSeg citations
#144 by lcolladotor was closed Apr 19, 2024
@lcolladotor @lahuuki
manual annotation
#143 by JiawenChenn was closed Apr 24, 2024
2
Provide anndata files out of the box
#142 by chaichontat was closed Feb 22, 2023
1
Supplementary Table Export
#141 by lahuuki was closed Feb 15, 2023
7 tasks done
@lcolladotor @boyiguo1
@lahuuki @Nick-Eagles
10
Explore _position_ enrichment results
#140 by lcolladotor was closed Feb 7, 2023
@lcolladotor
6
Add Melissa' & Prashanthi's code to this repo documentation Improvements or additions to documentation
#139 by lcolladotor was closed Feb 10, 2023
@prashanthi-ravichandran @Nick-Eagles @mgrantpeters
8
Supp fig: spatial location of manually annotated tissue imperfections tissue imperfections
#138 by lcolladotor was closed Feb 7, 2023
@prashanthi-ravichandran
2
Add tissue imperfections to R object + spatialLIBD app data sharing shiny apps tissue imperfections
#137 by lcolladotor was closed Feb 13, 2023
4 tasks done
@lcolladotor @prashanthi-ravichandran
@kmaynard12 @Nick-Eagles
9
Make SPOTlight results reproducible + use all input snRNA-seq data spot-deconvolution
#136 by lcolladotor was closed Jan 17, 2023
@Nick-Eagles
1
Fix Spatial Plot Dimensions
#135 by lahuuki was closed Dec 15, 2022
1
Inconsistent naming convention for Brain positions in the raw cluster results
#133 by boyiguo1 was closed Nov 24, 2022
4
snRNA Cell-cell Communication Results snRNA-seq
#132 by boyiguo1 was closed Nov 24, 2022
@boyiguo1
3
Test cell type composition acrosss anterior, mid, posterior spot-deconvolution
#131 by boyiguo1 was closed Dec 21, 2022
@boyiguo1
4
Cell-cell communication of Visium data spot-deconvolution
#130 by boyiguo1 was closed Dec 21, 2022
1 of 5 tasks
@boyiguo1
3
Deconvolution: Visium data spot-deconvolution
#129 by lcolladotor was closed Dec 1, 2022
2 tasks
@Nick-Eagles
1
Deconvolution: Visium IF data spot-deconvolution
#128 by lcolladotor was closed Oct 3, 2022
3 tasks done
@Nick-Eagles
1
Explore deconvolution marker genes (mean ratio) spot-deconvolution
#127 by lcolladotor was closed Sep 12, 2022
3 tasks
@Nick-Eagles
Density and/or proportion changes for each cell type across region spot-deconvolution
#126 by lcolladotor was closed Jan 30, 2023
@boyiguo1 @Nick-Eagles
2
Region white-matter enrichment trends snRNA-seq
#125 by lcolladotor was closed Feb 23, 2023
@lahuuki @Nick-Eagles
7
Region differential expression without white matter
#124 by abspangler13 was closed Dec 21, 2022
@lcolladotor
New Figure 3
#123 by abspangler13 was closed Dec 1, 2022
1 task
@lahuuki
8
spatial registration of psychENCODE Data
#122 by abspangler13 was closed Oct 6, 2022
2 tasks
@lcolladotor @lahuuki
3
spatial registration of psychE
#121 by abspangler13 was closed Jul 21, 2022
Update PCA plots for the region analysis
#120 by lcolladotor was closed Aug 2, 2022
1
spatially variable genes (svgs)
#119 by abspangler13 was closed Nov 2, 2022
7 of 9 tasks
@lahuuki
5
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