Skip to content

LBHB/nems-lite

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

nems-lite

WIP refactor of lbhb/NEMS and lbhb/nems_db

(temporary) installation instructions

clone <nems-lite> # using url, ssh, or however you normally clone
conda create -n nems-lite python=3.9  # or use your preferred environment manager
pip install -e nems-lite

Note: mkl library for numpy does not play well with tensorflow. If using conda to install dependencies, use conda-forge for numpy (which uses openblas instead of mkl): conda install -c conda-forge numpy (conda-forge/numpy-feedstock#84)

Coming soon, roughly in order of priority:

  • Convert dev_notebooks to unit tests where appropriate (& automatic testing using Travis, like nems0).
  • Set up readthedocs.
  • Add more Layers from nems0.
  • Add core pre-processing and scoring from nems0.
  • Try Numba for Layer.evaluate and cost functions.
  • Publish through conda install and pip install (and update readme accordingly).
  • Convert scripts and dev_notebooks to tutorials where appropriate.
  • Other core features (like jackknifed fits, cross-validation, etc.).
  • Backwards-compatibility tools for loading nems0 models.
  • Implement Jax back-end. ... (other things on the massive issues list)

About

Neural encoding model system core components

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 62.9%
  • Python 37.1%