A DSL for data-driven computational pipelines

POPS*: solvent accessible surface areas (SASAs) of proteins and nucleic acids

Population genetics notes

Very flexible tools for plotting and analyzing all kinds of RNA structure data

software for Findlay et al. 2023 "Quantifying negative selection in human 3ʹ UTRs uncovers constrained targets of RNA-binding proteins"

Resumes generated using the GitHub informations

RNA-seq workflow using STAR and DESeq2

Docker files for containerizing many bioinformatics tools for working with RNA-related data

A Github action for running a Snakemake workflow

A Snakemake Pipeline for RiboSNitch Prediction

Snakemake workflow management system and CLI generation tool

A simple Snakemake profile for Slurm without --cluster-config

boilerplate for reproducible and transparent science

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

Automatic gradient descent

A library for network {reconstruction, distances, dynamics}

PowerBacGWAS: Power calculations for Bacterial GWAS

Effortless argument parser

a python bioinformatics framework

Matplotlib template for SuperMongo style 🔭

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Draw RNA secondary structures in python.

Software for painlessly estimating average nucleotide diversity within and between populations

This is the development home of the Snakemake wrapper repository, see

SEER, reimplemented in python 🐍🔮

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Python 3 library with good support for both reading and writing VCF