Skip to content
View Kekananen's full-sized avatar

Block or report Kekananen

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Kekananen/README.md

Kat the Bioinformagician

I am a bioinformatian and computational biologist analyst at the Ohio State University Microbiology Department.

ResearchGate LinkedIn Outlook Github


My focus at the moment is in metagenomics; however, I love everything population genetics and evolutionary biology wise and may be willing to collaborate. Even if I may really wish to work on a topic with you, there is a chance I may have to decline as I can't take on more project then time allows for. If you want to do a collaboration, reach out and we can see if it is something that is in scope for my work. I will do my best to point you to resources minimally if we can't work something.

Current Projects

  • Creation of biological workflows and automization of data processes for 'omic datasets.
  • Updating the Phylogenize tool databases
  • Comparing genomic architecture of the Lactobacillus family.

Past Projects 2020-2023

  • The creation of a cBioPortal instance for the a project in collaboration with the Total Cancer Center
  • De novo Assembly including hybrid scaffolding with optical genome mapping and 3rd generation sequencing data
  • Development of data provisioning system for ingress and egress of large quantites of data (Terabytes)
  • Creation of biological workflows and automization of data processes for onco-related 'omic datasets

Past Projects 2015-2020

  • Development of statiscial software for BSA visualization
  • Development of variant ranking packages using human population databases
  • Analysis and esablishment of hybrid populations of Zea mays
  • Mapping population characterization and genomic archetecture in landraces of Zea mays

Current Stats

Kathryn's Github Stats: All Time Kathryn's Github Stats: All Time Kathryn's Github Stats: All Time Kathryn's Languages: All Time Kathryn's Languages: All Time

Pinned Loading

  1. recontig recontig Public

    Forked from blachlylab/recontig

    Dynamic Contig Nomenclature Reassignment

    D

  2. vargen vargen Public

    Forked from MCorentin/vargen

    VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the re…

    R 1