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awesome-genome-visualization Public
Forked from cmdcolin/awesome-genome-visualizationA list of interesting genome browser or genome-browser-like implementations
TypeScript UpdatedApr 3, 2024 -
Statistic-of-sequenced-plant-genome-assemlies Public
Forked from Darlene1997/Statistic-of-sequenced-plant-genome-assemliesR scripts
Python Apache License 2.0 UpdatedJan 10, 2024 -
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bio_docker_collcetion Public
Forked from wangshun1121/bio_docker_collcetionCollect docker files for bioinformatics
Dockerfile UpdatedJan 8, 2020 -
docker_ltr_retriever Public
Docker file LTR_retriever accurately identifies and annotates LTR retrotransposons; LAI evaluates the continuity of genome assemblies. https://www.ncbi.nlm.nih.gov/pmc/arti…
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jupyter_notebooks Public
This repo contains details Jupyter notebooks got genomic data analysis
Jupyter Notebook UpdatedAug 20, 2018 -
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pysamstats Public
Forked from alimanfoo/pysamstatsA fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
Python UpdatedJul 20, 2018 -
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maize_v4_TE_annotation Public
Forked from mcstitzer/maize_v4_TE_annotationscripts and intermediate files used to annotate TEs in Jiao et al.
Shell UpdatedJun 11, 2018 -
Ballgown Public
Ballgown R package for RNA-seq differential expression analysis
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docker_gff_utility_scripts Public
This repositary contains docker file for scripts to get summary statistics from Gff3 files
Shell UpdatedMay 24, 2018 -
Genome_annotation Public
Forked from mscampbell/Genome_annotationThese are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw
Perl UpdatedMay 23, 2018 -
dirHub Public
Forked from hkawaji/dirHubA trackHub configurator with directory structure projection.
Ruby Apache License 2.0 UpdatedMay 5, 2018 -
sleuth Public
sleuth is a program for analysis of RNA-Seq experiments for which transcript abundances have been quantified with kallisto
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common_scripts Public
Forked from ISUgenomics/common_scriptsmy bin directory
Perl UpdatedMar 7, 2018 -
repeatmodeler Public
RepeatModeler is a de-novo repeat family identification and modeling package.
Perl UpdatedDec 26, 2017 -
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Maize_Annotation_Jamboree Public
This repo contains details for the maize anntation jamboree to be held at CSHL
1 UpdatedNov 21, 2017 -
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SW_carpentary Public
This is a template for Software Carpentary workshops
Python Other UpdatedNov 3, 2017 -
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docker-builds Public
Forked from cyverse/docker-buildsA place to put docker build files
Perl UpdatedNov 1, 2017 -
workshop-template Public
Forked from carpentries/workshop-templateTemplate for workshop websites.
Python Other UpdatedOct 31, 2017 -
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cyverse-sdk Public
Forked from cyverse/cyverse-sdkA resource for CyVerse developers
Shell Other UpdatedSep 29, 2017