R scripts for data-driven cleaning, gating (FCS-data cleaning and gating.Rmd) and analysis (Analysis_of_FlowCytometry_data.Rmd) of flow cytometry data associated to the manuscript:
Bakowski K, Scharff L, Jensen PE, "Development of novel bicistronic IRES-based expression systems for Chlamydomonas reinhardtii", (Submitted)

It's based on a number of R packages, e.g. flowCore, flowDensity and plateCore packages with all their dependencies.