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Kalan-Lab

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  1. zol zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Python 40 4

  2. lsaBGC lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Python 34 4

  3. codoff codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

    Python 7

  4. Swaney_etal_CobamidePaper Swaney_etal_CobamidePaper Public

    Code for data analysis and visualization in Swaney et al. mSystems 2022

    R

  5. lsaBGC_Ckefir_Testing_Cases lsaBGC_Ckefir_Testing_Cases Public

    Shell

  6. Salamzade_etal_CtuberCompGen Salamzade_etal_CtuberCompGen Public

    Code for Comparative Genomics + Metagenomic Investigation of the C. tuberculostearicum species complex

    Python

Repositories

Showing 10 of 12 repositories
  • codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

    Kalan-Lab/codoff’s past year of commit activity
    Python 7 BSD-3-Clause 0 0 0 Updated Jul 7, 2024
  • zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Kalan-Lab/zol’s past year of commit activity
    Python 40 BSD-3-Clause 4 1 0 Updated Jul 6, 2024
  • lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Kalan-Lab/lsaBGC’s past year of commit activity
    Python 34 BSD-3-Clause 4 0 0 Updated May 20, 2024
  • DeLaCruz_Townsend_etal_PorcineSkinMicrobiome Public

    Code for data analysis and figures for the manuscript "Discovering the Microbial Community and Antifungals within the Porcine Skin Microbiome" by K. De La Cruz and E.C. Townsend et al.

    Kalan-Lab/DeLaCruz_Townsend_etal_PorcineSkinMicrobiome’s past year of commit activity
    R 0 0 0 0 Updated Apr 30, 2024
  • Townsend_etal_StillNotSterile Public

    Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

    Kalan-Lab/Townsend_etal_StillNotSterile’s past year of commit activity
    R 0 0 0 0 Updated Apr 11, 2024
  • Salamzade_etal_zol Public

    Misc. code & scripts associated with the zol & fai manuscript.

    Kalan-Lab/Salamzade_etal_zol’s past year of commit activity
    Batchfile 0 BSD-3-Clause 0 0 0 Updated Apr 1, 2024
  • Townsend_etal_WhatIsSlough Public

    Code for data analysis and figures for the manuscript "What is Slough? Defining the proteomic and microbial composition of wound slough and its implications for wound healing" by E.C. Townsend et al.

    Kalan-Lab/Townsend_etal_WhatIsSlough’s past year of commit activity
    R 0 0 0 0 Updated Jan 30, 2024
  • Spurgeon_Townsend_etal_MmuPV1_VaginalMicrobiome Public

    Code for data analysis and figures for the manuscript "Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model" by M.E. Spurgeon and E.C. Townsend et al.

    Kalan-Lab/Spurgeon_Townsend_etal_MmuPV1_VaginalMicrobiome’s past year of commit activity
    R 0 0 0 0 Updated Jan 18, 2024
  • Swaney_etal_CobamidePaper Public

    Code for data analysis and visualization in Swaney et al. mSystems 2022

    Kalan-Lab/Swaney_etal_CobamidePaper’s past year of commit activity
    R 0 0 0 0 Updated Oct 18, 2023
  • Swaney_etal_SkinMediaPaper Public

    Code for data analysis and visualization in Swaney et al. Microbiology Spectrum 2023

    Kalan-Lab/Swaney_etal_SkinMediaPaper’s past year of commit activity
    R 0 0 0 0 Updated Oct 18, 2023
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