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Kainmueller Lab

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  1. PatchPerPix PatchPerPix Public

    official implementation of the PatchPerPix instance segmentation method

    Python 27 4

  2. PatchPerPix_experiments PatchPerPix_experiments Public archive

    experiments script for the PatchPerPix instance segmentation method

    Python 8 3

  3. evaluate-instance-segmentation evaluate-instance-segmentation Public

    Evaluation scripts for nuclei instance segmentation in 2d and 3d

    Python 4 2

  4. aux_cpv_loss aux_cpv_loss Public

    An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images

    Python 3 1

  5. shift_equivariance_unet shift_equivariance_unet Public

    How Shift Equivariance Impacts Metric Learning for Instance Segmentation

    Jupyter Notebook 3 1

  6. plankton-dinov2 plankton-dinov2 Public

    Forked from facebookresearch/dinov2

    PyTorch code and models for the DINOv2 self-supervised learning method.

    Jupyter Notebook 1 3

Repositories

Showing 10 of 24 repositories
  • plankton-dinov2 Public Forked from facebookresearch/dinov2

    PyTorch code and models for the DINOv2 self-supervised learning method.

    Kainmueller-Lab/plankton-dinov2’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 706 1 2 Updated Jul 1, 2024
  • evaluate-instance-segmentation Public

    Evaluation scripts for nuclei instance segmentation in 2d and 3d

    Kainmueller-Lab/evaluate-instance-segmentation’s past year of commit activity
    Python 4 2 0 0 Updated Jun 12, 2024
  • fisbe Public
    Kainmueller-Lab/fisbe’s past year of commit activity
    SCSS 0 0 0 0 Updated Jun 4, 2024
  • PEERCE Public

    PEERCE, PD-L1 Expression Estimation for Rare Cancer Entities

    Kainmueller-Lab/PEERCE’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 3, 2024
  • ACTIS Public
    Kainmueller-Lab/ACTIS’s past year of commit activity
    Python 0 0 1 0 Updated Jan 8, 2024
  • mae3d_flylight Public Forked from facebookresearch/mae

    3d PyTorch implementation of MAE for the Flylight dataset

    Kainmueller-Lab/mae3d_flylight’s past year of commit activity
    Python 0 1,179 0 0 Updated Dec 18, 2023
  • Kainmueller-Lab/funlib.learn.torch’s past year of commit activity
    Python 0 11 0 0 Updated Dec 18, 2023
  • gunpowder Public Forked from funkelab/gunpowder

    A library to facilitate machine learning on multi-dimensional images.

    Kainmueller-Lab/gunpowder’s past year of commit activity
    Python 0 MIT 55 0 0 Updated Oct 31, 2023
  • ffn Public Forked from google/ffn

    Flood-Filling Networks for instance segmentation in 3d volumes.

    Kainmueller-Lab/ffn’s past year of commit activity
    Python 0 Apache-2.0 109 0 0 Updated Oct 29, 2023
  • brainbow Public
    Kainmueller-Lab/brainbow’s past year of commit activity
    Python 0 0 1 0 Updated Oct 26, 2023

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