Merge branch 'master' into build-rm-Versions.make

HISTORY.md

@@ -3293,7 +3293,7 @@ Deprecated or removed
  array interface should define their own `strides` method ([#25321]).
 
  * `module_parent`, `Base.datatype_module`, and `Base.function_module` have been deprecated
- in favor of `parentmodule` ([#TODO]).
+ in favor of `parentmodule` ([#25629]).
 
  * `rand(t::Tuple{Vararg{Int}})` is deprecated in favor of `rand(Float64, t)` or `rand(t...)`;
  `rand(::Tuple)` will have another meaning in the future ([#25429], [#25278]).

base/permuteddimsarray.jl

@@ -100,26 +100,37 @@ julia> A = reshape(Vector(1:8), (2,2,2))
  5 7
  6 8
 
-julia> permutedims(A, (3, 2, 1))
+julia> perm = (3, 1, 2); # put the last dimension first
+
+julia> B = permutedims(A, perm)
 2×2×2 Array{Int64, 3}:
 [:, :, 1] =
- 1 3
- 5 7
+ 1 2
+ 5 6
 
 [:, :, 2] =
- 2 4
- 6 8
+ 3 4
+ 7 8
 
-julia> B = randn(5, 7, 11, 13);
+julia> A == permutedims(B, invperm(perm)) # the inverse permutation
+true
+```
 
-julia> perm = [4,1,3,2];
+For each dimension `i` of `B = permutedims(A, perm)`, its corresponding dimension of `A`
+will be `perm[i]`. This means the equality `size(B, i) == size(A, perm[i])` holds.
 
-julia> size(permutedims(B, perm))
+```jldoctest
+julia> A = randn(5, 7, 11, 13);
+
+julia> perm = [4, 1, 3, 2];
+
+julia> B = permutedims(A, perm);
+
+julia> size(B)
 (13, 5, 11, 7)
 
-julia> size(B)[perm] == ans
+julia> size(A)[perm] == ans
 true
-```
 """
 function permutedims(A::AbstractArray, perm)
  dest = similar(A, genperm(axes(A), perm))

deps/blastrampoline.mk

@@ -15,7 +15,7 @@ $(BUILDDIR)/$(BLASTRAMPOLINE_SRC_DIR)/build-compiled: $(BUILDDIR)/$(BLASTRAMPOLI
  echo 1 > $@
 
 define BLASTRAMPOLINE_INSTALL
- $(MAKE) -C $(BUILDDIR)/$(BLASTRAMPOLINE_SRC_DIR)/src $(MAKE_COMMON) install
+ $(MAKE) -C $(BUILDDIR)/$(BLASTRAMPOLINE_SRC_DIR)/src $(MAKE_COMMON) install DESTDIR="$2"
 endef
 $(eval $(call staged-install, \
  blastrampoline,$(BLASTRAMPOLINE_SRC_DIR), \

deps/blastrampoline.version

@@ -3,5 +3,5 @@ BLASTRAMPOLINE_JLL_NAME := libblastrampoline
 
 ## source build
 BLASTRAMPOLINE_VER := 5.1.0
-BLASTRAMPOLINE_BRANCH=v5.0.1
-BLASTRAMPOLINE_SHA1=d32042273719672c6669f6442a0be5605d434b70
+BLASTRAMPOLINE_BRANCH=v5.1.1
+BLASTRAMPOLINE_SHA1=bac2f810d523003fbb431ecc6e9ea81c8b86e2d6

deps/checksums/SparseArrays-0759ceac6e89d03b9abcea27ba1b7bfa6d806721.tar.gz/md5

@@ -0,0 +1 @@
+9e1b18aaaeee1ed2f1c6f5b26541a3c8

deps/checksums/SparseArrays-0759ceac6e89d03b9abcea27ba1b7bfa6d806721.tar.gz/sha512

@@ -0,0 +1 @@
+e799c89d4b9079690ef129e61992f2294ad173cb9f9c9e8106220e11483986ff024cf65221a91d9e19e446eae836680f376ee8eeb66b2f2e971e5e055eac4668

deps/checksums/SparseArrays-2bbdd7a12ead8207593655c541ba347761a9c663.tar.gz/md5

@@ -0,0 +1 @@
+db4be14b084094a3a083160fce142b01

deps/checksums/SparseArrays-2bbdd7a12ead8207593655c541ba347761a9c663.tar.gz/sha512

@@ -0,0 +1 @@
+886dbede7bbc484cb8aa4c5ac7d05940890f00bff32b31a489dcbb873c7f6d956d15ab92638d67b7ba3638f429371af57be76a4949a860efa52d457941ed7f47

deps/checksums/blastrampoline

@@ -1,34 +1,34 @@
-blastrampoline-d32042273719672c6669f6442a0be5605d434b70.tar.gz/md5/f380e4238a2dec186ecfe9598f75b824
-blastrampoline-d32042273719672c6669f6442a0be5605d434b70.tar.gz/sha512/00437a96b57d99cef946257480e38e1dfdf325c46bc4a1619f5067565dfb7d9f668b0c8415badb0879b933cb1972f3c4e6be4c9e63a8a85728033e2183373819
-libblastrampoline.v5.1.0+0.aarch64-apple-darwin.tar.gz/md5/edf090a17d862c33d611875058438757
-libblastrampoline.v5.1.0+0.aarch64-apple-darwin.tar.gz/sha512/a3413c7d46c04318a5bebf10d6f930d04b5997d4be6be4e2748a7b60f968d2f2be7de140eee6c699962a12e8439f68f144e5323dea17d91587e82f97aaaaaa24
-libblastrampoline.v5.1.0+0.aarch64-linux-gnu.tar.gz/md5/fe88a410d795f805756488915679edbd
-libblastrampoline.v5.1.0+0.aarch64-linux-gnu.tar.gz/sha512/cbd31304278ea67ddc0f766c4647275c87829cf5377c3851153b7568015f4f016fd0f3e095f479c33d23a50f4af8c38bae4555b02dcbf45a04b6e5a0dd3504a8
-libblastrampoline.v5.1.0+0.aarch64-linux-musl.tar.gz/md5/d4d8c393eb28953297b37a7bae79ed2e
-libblastrampoline.v5.1.0+0.aarch64-linux-musl.tar.gz/sha512/3b5dca87e089ac10486f75663b4cf7d404c71b040231b04e1ec5110d13f30ac620b4cb880040106273866d465da9bdda5643887534de8e35668a7ab545422216
-libblastrampoline.v5.1.0+0.armv6l-linux-gnueabihf.tar.gz/md5/8b5f2fbd5442bf31bd10836ffd177968
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-libblastrampoline.v5.1.0+0.x86_64-unknown-freebsd.tar.gz/md5/f2b66517937a7647086ba96acc81c6a6
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-libblastrampoline.v5.1.0+0.x86_64-w64-mingw32.tar.gz/sha512/6a0f1d061350d53dd2a030ba11a0ac02c5ae598cd2c21dda39f95d81a2b0f43a454d60cf32c2fc0546df074181100e2d247d229d62c4a6b94bc7b697b02f0e0e
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+blastrampoline-bac2f810d523003fbb431ecc6e9ea81c8b86e2d6.tar.gz/sha512/eff4c34f19fd444cf3379c81836db82848287aca6106d952127565a0ee2d36797fa36b9f48b77db6a9a0c27dd307400385236ed335d7e58ecc7ec92de32af2c6
+libblastrampoline.v5.1.1+0.aarch64-apple-darwin.tar.gz/md5/a6475f23420c26d97b1baf1e37cc13b5
+libblastrampoline.v5.1.1+0.aarch64-apple-darwin.tar.gz/sha512/96386a4e0b57bc50cbefbb0eb75b037571e3d9ae3900122bb8d4f7f14db017b9e8a6dd2eceff07c9880dda2e072b89df7d21432fd5a08bef87a282cfc3bfbb82
+libblastrampoline.v5.1.1+0.aarch64-linux-gnu.tar.gz/md5/c28450dc1999d9304414288b267d72f2
+libblastrampoline.v5.1.1+0.aarch64-linux-gnu.tar.gz/sha512/19303d32b316cbce29f93dfb713987d6567946262158f1aa5f447a86197843d2875915fc6282264f49747237844f8cf32f9e5b2a0d6f67d514474823e7929de5
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+libblastrampoline.v5.1.1+0.aarch64-linux-musl.tar.gz/sha512/c2fbc67fd8ab61bc854722949ac87d19fb7ae3e732f01e9ed855204605ef1b2756db4272688807a9928eba3cfe949099a3e74ea68c432219c023216d82e44b1b
+libblastrampoline.v5.1.1+0.armv6l-linux-gnueabihf.tar.gz/md5/2d564a40dafc6e3001bcb13f2460306a
+libblastrampoline.v5.1.1+0.armv6l-linux-gnueabihf.tar.gz/sha512/2ba59a5ea48bb4e9fafc5a34b8bc09fda9f4aa15917e41a87410d888ff69832fbd54a6ed6a401e0686dd2fd46e90603969ee42497691270921cf5688c8a1d2f7
+libblastrampoline.v5.1.1+0.armv6l-linux-musleabihf.tar.gz/md5/41cd8967ea13f76301e2760ce20b16b9
+libblastrampoline.v5.1.1+0.armv6l-linux-musleabihf.tar.gz/sha512/40f69ae9e352215e8faa65ca8451d5850090cafc3b71207df2f588ebd06d247fab4af02a544e5389a9e5a89a38d5a89f71ad8d1bf7bc695d9cf8903e9654ac87
+libblastrampoline.v5.1.1+0.armv7l-linux-gnueabihf.tar.gz/md5/a689ed70eba7f191a32508c5e266952a
+libblastrampoline.v5.1.1+0.armv7l-linux-gnueabihf.tar.gz/sha512/47e5e1f1ef3f7dbf22c48bc9a09c0abb5abb967885c288c74b51249a22aab0cf475887e612f219e5abb905eab3018d5b5225682bfcc908debd6ff8d509e1a23c
+libblastrampoline.v5.1.1+0.armv7l-linux-musleabihf.tar.gz/md5/ed08534ca3f065d391c2484c5fe6fd6b
+libblastrampoline.v5.1.1+0.armv7l-linux-musleabihf.tar.gz/sha512/014d10a154ce3d35dd428dae52d4d52445d1cc1d501aed5f490332b663438a000b02992946b0ce18bf2e829339a35e163f684568f3484c83ca4f8584da4cc405
+libblastrampoline.v5.1.1+0.i686-linux-gnu.tar.gz/md5/b5f315c6e3b719991f4750d0451ac13b
+libblastrampoline.v5.1.1+0.i686-linux-gnu.tar.gz/sha512/b67a478b532b664c1729a151d62f070308806476a2ca38bde3d20648676f1ed7f41ada42650641f98eb165beba984d40ddbe667b49b99213321c54d72c2f0f81
+libblastrampoline.v5.1.1+0.i686-linux-musl.tar.gz/md5/69b0b2128c7b482bc6f7b769d30322cc
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+libblastrampoline.v5.1.1+0.i686-w64-mingw32.tar.gz/md5/b16bdd51b0d3336bca03374cd23884da
+libblastrampoline.v5.1.1+0.i686-w64-mingw32.tar.gz/sha512/f323fae462a4d1210fbab1f6b253224b385c5a3c5e259cd4ce57fc4f77ba53293b8f14a3cd9db1f7c8ee2dab461aa36d62a8ec8e9693f3c257b8401de6550cc1
+libblastrampoline.v5.1.1+0.powerpc64le-linux-gnu.tar.gz/md5/d8f0d6980b97ae48a9d97dbfa28e6d1c
+libblastrampoline.v5.1.1+0.powerpc64le-linux-gnu.tar.gz/sha512/f1137c5357153c0c309277d39398c2338297be73de995ae083397da5c170c4b1bec6939b6e160601b98ea40c42f9b563ac5ac1625341cde1ece6b1b5f5ec01f5
+libblastrampoline.v5.1.1+0.x86_64-apple-darwin.tar.gz/md5/088b8d27b76be56fcd7ed4383e5912d3
+libblastrampoline.v5.1.1+0.x86_64-apple-darwin.tar.gz/sha512/52741282b55f1ee0ded1aa63e4313a84be0862209f8a4439ef2076a03010c0d91083ca35cacbf187de77817ad864625a3dfd2769881764e3d9434ae387405778
+libblastrampoline.v5.1.1+0.x86_64-linux-gnu.tar.gz/md5/562215ad47d93c83c6587051ef201f0c
+libblastrampoline.v5.1.1+0.x86_64-linux-gnu.tar.gz/sha512/9217f6afa0f3ef534c361fc09d14bfdf8322a8942c5e2ca0fc9234839e48d56339f03126aa9706b2ef067f88433d79f7d6f8824bb5763b99f64ef42919c3ab0b
+libblastrampoline.v5.1.1+0.x86_64-linux-musl.tar.gz/md5/bd9b17ebc05ae50fc125c3cf1df8f990
+libblastrampoline.v5.1.1+0.x86_64-linux-musl.tar.gz/sha512/68b0ea95d404508038ca84b426c3ec02ae98b129e92a0f661766ab08bf38750f92a8aa41c53327bc2f6787b42504025011eaf79bb98febace4c41e628caf2094
+libblastrampoline.v5.1.1+0.x86_64-unknown-freebsd.tar.gz/md5/0308d4a7312bacc62446438f4d4b6894
+libblastrampoline.v5.1.1+0.x86_64-unknown-freebsd.tar.gz/sha512/d4085d81e85b9c1ffefd5a6147deea9f04436e1145eca73e5b63dba048aeaab9c497df725dc3104a77c834597363b7205ef7270f96ae94f06c950f7574e25d07
+libblastrampoline.v5.1.1+0.x86_64-w64-mingw32.tar.gz/md5/2a883d986c884be08ef332bcdc3ab52e
+libblastrampoline.v5.1.1+0.x86_64-w64-mingw32.tar.gz/sha512/dacbcbe09910b7965448b22f3dbd55945bbe22d06c60a92d2c97da83f0b08d00278ff870eada470213fe22fa3c8acfcc0be8b753a885d98898d048e896c909ad

deps/checksums/suitesparse

@@ -1,7 +1,7 @@
 SuiteSparse-5.10.1.tar.gz/md5/68bb912f3cf3d2b01f30ebafef690302
 SuiteSparse-5.10.1.tar.gz/sha512/8f85c6d63b76cba95707dfa732c51200df7794cb4c2599dbd92100475747b8d02b05089a47096e85c60b89bc852a8e768e0670f24902a82d29494a80ccf2bb5f
-SuiteSparse-f63732c1c6adecb277d8f2981cc8c1883c321bcc.tar.gz/md5/baeb73b8ac38dd04174ed04fa1ea8cef
-SuiteSparse-f63732c1c6adecb277d8f2981cc8c1883c321bcc.tar.gz/sha512/a95e6ebafe948f419a65a9630b01cda380f3ce19499afe57e212a75dd43aa7a09ddd038e90d1215ae55566a676e392e696565d2d7a96853ec4fca7f73762b268
+SuiteSparse-ed89e0fe3d8908cede058f42f872ba60159af0a6.tar.gz/md5/3019404c83511b5aab962559c2924072
+SuiteSparse-ed89e0fe3d8908cede058f42f872ba60159af0a6.tar.gz/sha512/06fa991da05376ee7e55a30f6fa29ab60ed2cec79818e217290e0e256233ee321fb25a764cbe834c3e94755b02d5326c93c8f1b686c53da28023778787e6d57f
 SuiteSparse.v5.10.1+0.aarch64-apple-darwin.tar.gz/md5/b9392f8e71c0c40d37489e7b2071c5ad
 SuiteSparse.v5.10.1+0.aarch64-apple-darwin.tar.gz/sha512/109d67cb009e3b2931b94d63cbdaaee29d60dc190b731ebe3737181cd48d913b8a1333043c67be8179c73e4d3ae32ed1361ab4e34312c0f42e4b29f8a7afda3e
 SuiteSparse.v5.10.1+0.aarch64-linux-gnu.tar.gz/md5/1b2651ede4a74cd57f65505a65093314

deps/libsuitesparse.mk

@@ -18,13 +18,18 @@ ifneq ($(USE_BINARYBUILDER_LIBSUITESPARSE), 1)
 LIBSUITESPARSE_PROJECTS := AMD BTF CAMD CCOLAMD COLAMD CHOLMOD LDL KLU UMFPACK RBio SPQR
 LIBSUITESPARSE_LIBS := $(addsuffix .*$(SHLIB_EXT)*,suitesparseconfig amd btf camd ccolamd colamd cholmod klu ldl umfpack rbio spqr)
 
-SUITE_SPARSE_LIB := $(LDFLAGS) -L"$(abspath $(BUILDDIR))/SuiteSparse-$(LIBSUITESPARSE_VER)/lib"
+SUITESPARSE_LIB := $(LDFLAGS) -L"$(abspath $(BUILDDIR))/SuiteSparse-$(LIBSUITESPARSE_VER)/lib"
 ifeq ($(OS), Darwin)
-SUITE_SPARSE_LIB += $(RPATH_ESCAPED_ORIGIN)
+SUITESPARSE_LIB += $(RPATH_ESCAPED_ORIGIN)
 endif
-LIBSUITESPARSE_MFLAGS := CC="$(CC)" CXX="$(CXX)" F77="$(FC)" AR="$(AR)" RANLIB="$(RANLIB)" BLAS="-L$(build_shlibdir) -lblastrampoline" LAPACK="-L$(build_shlibdir) -lblastrampoline" \
- LDFLAGS="$(SUITE_SPARSE_LIB)" CFOPENMP="" CUDA=no CUDA_PATH="" \
- UMFPACK_CONFIG="$(UMFPACK_CONFIG)" CHOLMOD_CONFIG="$(CHOLMOD_CONFIG)" SPQR_CONFIG="$(SPQR_CONFIG)"
+LIBSUITESPARSE_MFLAGS := CC="$(CC)" CXX="$(CXX)" F77="$(FC)" \
+ AR="$(AR)" RANLIB="$(RANLIB)" \
+ BLAS="-L$(build_shlibdir) -lblastrampoline" \
+ LAPACK="-L$(build_shlibdir) -lblastrampoline" \
+ LDFLAGS="$(SUITESPARSE_LIB)" CFOPENMP="" CUDA=no CUDA_PATH="" \
+ UMFPACK_CONFIG="$(UMFPACK_CONFIG)" \
+ CHOLMOD_CONFIG="$(CHOLMOD_CONFIG)" \
+ SPQR_CONFIG="$(SPQR_CONFIG)"
 ifeq ($(OS),WINNT)
 LIBSUITESPARSE_MFLAGS += UNAME=Windows
 else

doc/Makefile

@@ -28,7 +28,7 @@ DOCUMENTER_OPTIONS := linkcheck=$(linkcheck) doctest=$(doctest) buildroot=$(call
 UNICODE_DATA_VERSION=13.0.0
 $(SRCCACHE)/UnicodeData-$(UNICODE_DATA_VERSION).txt:
  @mkdir -p "$(SRCCACHE)"
- $(JLDOWNLOAD) "$@" http:https://www.unicode.org/Public/$(UNICODE_DATA_VERSION)/ucd/UnicodeData.txt
+ $(JLDOWNLOAD) "$@" https:https://www.unicode.org/Public/$(UNICODE_DATA_VERSION)/ucd/UnicodeData.txt
 
 deps: $(SRCCACHE)/UnicodeData-$(UNICODE_DATA_VERSION).txt
  $(JLCHECKSUM) "$<"

doc/make.jl

@@ -238,12 +238,6 @@ DocMeta.setdocmeta!(
  maybe_revise(:(using SparseArrays, LinearAlgebra));
  recursive=true, warn=false,
 )
-DocMeta.setdocmeta!(
- SuiteSparse,
- :DocTestSetup,
- maybe_revise(:(using SparseArrays, LinearAlgebra, SuiteSparse));
- recursive=true, warn=false,
-)
 DocMeta.setdocmeta!(
  UUIDs,
  :DocTestSetup,