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Make transposes of StridedArrays strided #29135

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merged 5 commits into from
May 4, 2020
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mbauman
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@mbauman mbauman commented Sep 11, 2018

but only in cases where the transpose is actually stored in memory.

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Would it be at all beneficial to use reverse(strides(parent(A))) ?

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mbauman commented Sep 14, 2018

Sure enough:

julia> t = transpose(rand(3,4));

julia> s1(A) = (stride(A.parent, 2), stride(A.parent, 1))
       s2(A) = reverse(strides(A.parent))
s2 (generic function with 1 method)

julia> @btime s1($t)
  7.056 ns (0 allocations: 0 bytes)
(3, 1)

julia> @btime s2($t)
  2.032 ns (0 allocations: 0 bytes)
(3, 1)

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mbauman commented Sep 14, 2018

Oh wait, that won't quite do it because of transposed vectors… should have actually tested it more thoroughly locally.

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_adjoint_strides((a,)) = (a,1)
_adjoint_strides((a,b)) = (b,a)
strides(A::Adoint) = _adjoint_strides(strides(parent(A)))

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mbauman commented Sep 14, 2018

The answer for strided vectors is neither reverse(strides(A)) nor (stride(A,1), 1) nor (length(A), stride(A, 1)). Given that all three of us got this optimization wrong at first glance, I'm heavily inclined to just ask the vector itself for its stride(A, 2) instead of trying to re-implement that computation ourselves as a micro-optimization.

(I believe the correct answer is s = stride(A, 1); return (length(A)*s, s), but given that you should only ever multiply this number by 0 the point is somewhat moot… although you might get yourself in trouble with some error-checking routines that assert the strides are non-overlapping).

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mbauman commented Apr 1, 2020

Let's re-run CI and get this in.

@mbauman mbauman closed this Apr 1, 2020
@mbauman mbauman reopened this Apr 1, 2020
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mcabbott commented Apr 1, 2020

Perhaps related, pointer(transpose(ones(2,2)) gives an error right now (on Julia 1.4), should this also work?

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mbauman commented Apr 1, 2020

Yes, I think we could add pointer(::Transpose) (and it make sense to do so in this PR) but I don't think we should add pointer(::Adjoint) as the latter elements aren't actually stored on disk.

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mcabbott commented Apr 1, 2020

Shouldn't it follow strides and work for an Adjoint of real numbers?

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mbauman commented Apr 1, 2020

Ah, yes, I had forgotten I did that. That's perfect.

@@ -186,6 +186,16 @@ IndexStyle(::Type{<:AdjOrTransAbsMat}) = IndexCartesian()
convert(::Type{Adjoint{T,S}}, A::Adjoint) where {T,S} = Adjoint{T,S}(convert(S, A.parent))
convert(::Type{Transpose{T,S}}, A::Transpose) where {T,S} = Transpose{T,S}(convert(S, A.parent))

# Strides and pointer for transposed strided arrays — but only if the elements are actually stored in memory
Base.strides(A::Adjoint{<:Real, <:StridedVector}) = (stride(A.parent, 2), stride(A.parent, 1))
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This should not restrict to <: StridedVector. The strided array interface means other array types should be supported.

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Yes, I fully agree, but this is intended as a stopgap and not a full solution.

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FYI In ArrayLayouts.jl I came up with the following way to deal with the complex adjoint pointer issue: introduce ConjPtr to represent that the pointer is to the conjugate of the element.

"""
    ConjPtr{T}

represents that the entry is the complex-conjugate of the pointed to entry.
"""
struct ConjPtr{T} 
    ptr::Ptr{T}
end

unsafe_convert(::Type{Ptr{T}}, A::Adjoint{<:Real}) where T<:Real = unsafe_convert(Ptr{T}, parent(A))
unsafe_convert(::Type{Ptr{T}}, A::Transpose) where T = unsafe_convert(Ptr{T}, parent(A))
# work-around issue with complex conjugation of pointer
unsafe_convert(::Type{Ptr{T}}, Ac::Adjoint{<:Complex}) where T<:Complex = unsafe_convert(ConjPtr{T}, parent(Ac))
unsafe_convert(::Type{ConjPtr{T}}, Ac::Adjoint{<:Complex}) where T<:Complex = unsafe_convert(Ptr{T}, parent(Ac))    
function unsafe_convert(::Type{ConjPtr{T}}, V::SubArray{T,2}) where {T,N,P}
    kr, jr = parentindices(V)
    unsafe_convert(Ptr{T}, view(parent(V)', jr, kr))
end

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Bump, for 1.5?

@StefanKarpinski StefanKarpinski added the status:triage This should be discussed on a triage call label Apr 30, 2020
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mbauman commented May 4, 2020

So was this discussed on the triage call? I really don't think it should be all that controversial — the only controversial thing is how minimally I've scoped it in an effort to keep in uncontroversial.

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Your call, @mbauman.

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mbauman commented May 4, 2020

Let's do this then. Part of the reason it's scoped so narrowly is to ensure we have space to move towards traits or whatever the bigger solution turns out to be.

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6 participants