SegPore is a software to segment the raw Nanopore direct RNA sequence, and to estimate various RNA modifications and secondary folding structures.

Magnipore: Differential single nucleotide changes of ONT signals

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data

Create Customized Software using Natural Language Idea (through LLM-powered Multi-Agent Collaboration)

Fit data to many distributions

Codes and results from ONT dRNA benchmarking

Predictive kmer models for development use

Wrapper to read fast5, slow5, blow5 and pod5 files.

Pod5: a high performance file format for nanopore reads.

Bioinformatics one liners from Ming Tang

Oxford Nanopore's Basecaller

Visualise and analyse nanopore (ONT) raw signals

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

A curated list of awesome nanopore analysis tools.

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files

Data and analysis for NA12878 genome on nanopore

Visualization of scRNA-seq data.

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA