Stars
Notebooks to interact with the CAVE infrastructure, hosted by the Lichtman Lab and VCG at Harvard.
The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…
A deep learning framework for multi-animal pose tracking.
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
[ECCV 2024] The official code of paper "Open-Vocabulary SAM".
[NeurIPS 2023 Spotlight] LightZero: A Unified Benchmark for Monte Carlo Tree Search in General Sequential Decision Scenarios (awesome MCTS)
Accelerated pose estimation and tracking using semi-supervised convolutional networks.
Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
Repository for the manuscript "Combined topological and spatial constraints are required to capture the structure of neural connectomes"
Using color jitter to distinguish individuals in categorically colored visualizations
Official implementation of the CVPR 2024 paper ViT-CoMer: Vision Transformer with Convolutional Multi-scale Feature Interaction for Dense Predictions.
SuperAnimal models supporting data
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
3D dense segmentation compression codec based on crack codes.
Python tools for analysing body movements across space and time
MeshMAE: Masked Autoencoders for 3D Mesh Data Analysis
Multi-Object Tracker using Integer Linear Equations
Superhuman accuracy on the SNEMI3D connectomics challenge
PyTorch code and models for the DINOv2 self-supervised learning method.
Course and exercises on deep learning for microscopy image analysis
Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.
A library to generate LaTeX expression from Python code.
The mutex watershed for image segmentation.
Connectome Reconstruction and Exploration Simple Tool
Supplemental data for Schlegel et al. (2024)