Stars
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
This is a deep learning method for identification of viral contigs with short length from metagenomic data.
De novo assembler for single molecule sequencing reads using repeat graphs
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Interactively explore metagenomes and more from a web browser.
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
๐พ ๐ "Reads to report" for public health and clinical microbiology