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JCodes96/Squalene_synthase_SQS_genes_in_1000_plants_1KP

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This repository includes scripts created for the consolidation and analyses of data from the 1,000 Plants (1KP) project [1, 2].

  1. Command-line script to scan reference-names.tsv and nucleotides.fa within clade-organized species folders. Consolidates Clade, Species, 1KP ID, Assembly Number, GenInfo ID, Source, and Sequence information into .csv files based on gene copy numbers (0, 1, or more).

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Scripts for analyses of squalene synthase (SQS) genes in 1,000 Plants (1KP).

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