RNA-seq aligner

🔬 Path to a free self-taught education in Bioinformatics!

⛓️ Construct a Physical Map from Linked Reads

Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

List of papers on hallucination detection in LLMs.

Genome Assembly and Annotation Service code

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study

MS Word template for styling a manuscript for a bioRxiv submission

Relative Expression Ordering Analysis (REOA) package

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Fast HLA type inference from whole-genome data

Heart Rate Variability Training with the Polar H10 Monitor

Breathing analysis with Polar H10 Heart Rate Monitor

Tools to gather evidence for structural variation via breakpoint detection.

Repository to store machine learning, artificial intelligence, and deep learning implementations with explanations

Gencode UTR fix

an API for intersections of genomic data

Filtering and trimming of long read sequencing data

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Repository for bioinformatics training at the Norwegian Veterinary Institute

PDF to ODT format converter

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.