Releases v0.4.2
General
Stabilize tests (#1240 , #1254 )
Update type annotations and documentations (#1239 , #1248 , #1255 , #1258 , #1251 , #1268 , #1275 )
GHA/Codeowner changes (#1260 , #1261 , #1259 , #1262 , #1285 )
Update utility functions (#1243 )
Refactor progress bars (#1272 )
Clear Notebook output(#1246 , #1277 , #1274 , #1271 , #1276 , #1278 ,)
Optimize
(Sac)ESSOptimizer: History of best objective values (#1212 )
Fix missing fixed parameters in scatter search results (#1265 )
Fix TypeError in pypesto.result.optimize.OptimizerResult.summary if x0 is None (#1266 )
ESSOptimizer: Include results for local searches in OptimizeResult (#1270 )
New Feature : Spline Approximation (#1222 )Select
Allow for hierarchical problems (#1241 )
custom minimize method (#1264 )
Hierarchical
Log space startpoint sampling (#1242 )
Support for box constraints on offset and scaling parameters (#1238 )
restructuring and add relative to InnerCalculatorCollector (#1245 )
History
Support pathlib.Path for result/history files (#1247 )
Extended Amici history (#1263 )
Visualize
Fix time trajectories for hierarchical problems (#1213 )
Fix hierarchical parameter plotting for all optimizers (#1244 )
Sacess history plot (#1250 )
Objective
Fix PEtab.jl version to before 2.5.0 (temporarily) (#1256 )
PEtab
Enable Importer passing verbose to create_model (#1269 )
PetabImporter: version-specific amici model directories (#1283 )
Problem
Problem: add inner problem names, bounds and hierarchical flag (#1282 )
Use warnings.warn instead of logging.warn when loading Problem from HDF5 without an Objective (#1253 )
Ensemble
EnsemblePrediction: remove "no predictor" warning (#1293 )
You can’t perform that action at this time.