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Releases: ICB-DCM/pyABC

pyABC 0.12.14

10 Nov 15:47
26b5070
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Visualization:

  • Selected plotly versions of matplotlib visualizations

General:

  • Added functionality to evaluate the model using boundary values of parameter

pyABC 0.12.13

08 Nov 14:54
558d5e4
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Bugfix release for pyABC's visserver.

pyABC 0.12.12

18 Aug 16:56
d1542fb
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Visualization:

  • Dash-based visualization server (#581)

pyABC 0.12.11

06 Jul 20:01
7cbf832
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Fixes (#608)

  • Fix petab test suite (different name resolution)
  • Fix LocalTransition (pandas -> numpy argument)
  • Fix sklearn intersphinx

pyABC 0.12.10

09 May 11:07
5508549
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General:

  • Update to Python 3.11, drop Python 3.8 support
  • Turn simple files into submodules for cleaner import
  • Fix dask sampler (change default pickling and use global function that it can pickle)

Documentation:

  • Configure readthedocs build environment
  • Refactor API docs (add [+]; easier navigation)
  • Correct scipy intersphinx link
  • Add docstrings to submodules

Minor fixes:

  • Flake8 fixes of dict creation from key+value
  • Fix imports from correct submodule in external submodule
  • Fix package versions in migration test

Visualization:

  • Contour plots as a direct alternative to kernel density heat maps
    and histograms (#597)
  • Fix column renaming in visserver

pyABC 0.12.9

01 Mar 10:13
7d9c109
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Minor:

  • Improve documentation of p-norm (#592)
  • Update citation to JOSS
  • Temporarily fixate sqlalchemy version
  • Update pre-commit hooks (all #596)

pyABC 0.12.8

16 Nov 11:35
59e06fd
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  • Fix look-ahead implementation in case of biased proposals (#568)

Minor:

  • Remove boteh in test env as distributed #7227 got fixed
  • Remove obsolete two gaussians test
  • Fix Mixin random seed (set it via /dev/urandom)
  • Update viserver to bokeh >= 3.0.1 (different import of TabPanel, Tabs)
    (all #589)
  • Fix sqlalchemy warning "SAWarning: TypeDecorator BytesStorage()
    will not produce a cache key" (#590)

pyABC 0.12.7

30 Oct 17:49
b92b4fb
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  • Ignore B027 empty method in an abstract base class
  • Refactor EPSMixin
  • Fix EPSMixin for ConcurrentFutureSampler
  • Temporarily add bokeh to test due to dask error

pyABC 0.12.6

30 Aug 11:24
b44299e
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  • Add JOSS paper of version 0.12.5
  • Update Julia reference DiffEqJump -> JumpProcesses (name change)
  • Unfix jinja2
  • Update flake8 dependencies after new issues

pyABC 0.12.5

21 Jun 18:09
b077f5a
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Minor:

  • Document outdated Google Colab version (Python 3.7)