Merge pull request #165 from moshonk/mchimmunizations

Mchimmunizations

api/src/main/distro/metadata/concepts.xml

@@ -3,7 +3,9 @@
  <ref key="ABACAVIR" uuid="70056AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ACUTE_FULMINATING_TYPE_B_VIRAL_HEPATITIS" uuid="149799AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ACUTE_TYPE_B_VIRAL_HEPATITIS" uuid="121812AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="ADMINISTRATION_OF_VITAMIN_A" uuid="161534AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ADULT_INPATIENT_SERVICE" uuid="160536AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="ALBENDAZOLE" uuid="70439AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ANTENATAL_CASE_NUMBER" uuid="161655AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ANTIRETROVIRAL_DRUGS" uuid="1085AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ANTIRETROVIRAL_TREATMENT_START_DATE" uuid="159599AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -12,6 +14,7 @@
  <ref key="APGAR_SCORE_AT_1_MINUTE" uuid="159603AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="APGAR_SCORE_AT_5_MINUTES" uuid="159604AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="APGAR_SCORE_AT_10_MINUTES" uuid="159605AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="BACILLE_CAMILE_GUERIN_VACCINATION" uuid="886AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="BREASTFED_EXCLUSIVELY" uuid="5526AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="CD4_COUNT" uuid="5497AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="CD4_PERCENT" uuid="730AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -24,11 +27,13 @@
  <ref key="CONFIRMATION_STATUS" uuid="162082AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="COTRIMOXAZOLE_DISPENSED" uuid="162229AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="COUGH_LASTING_MORE_THAN_TWO_WEEKS" uuid="159799AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="COUNSELING_ORDERS" uuid="1379AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="CURRENT_WHO_STAGE" uuid="5356AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="CURRENTLY_USING_BIRTH_CONTROL" uuid="965AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DARUNAVIR" uuid="74258AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DAPSONE" uuid="74250AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DATE_ENROLLED_IN_HIV_CARE" uuid="160555AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="DATE_FIRST_SEEN" uuid="162140AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DATE_OF_CONFINEMENT" uuid="5599AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DATE_OF_HIV_DIAGNOSIS" uuid="160554AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DATE_OF_PARTNER_HIV_DIAGNOSIS" uuid="160082AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -41,10 +46,13 @@
  <ref key="DEVELOPMENTAL_MILESTONES" uuid="162069AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DIDANOSINE" uuid="74807AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DIED" uuid="160034AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="DIPHTHERIA_TETANUS_AND_PERTUSSIS_VACCINATION" uuid="781AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="DISABILITY" uuid="162558AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DISCORDANT_COUPLE" uuid="6096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DISEASE_DIAGNOSED" uuid="1661AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DISEASE_SUSPECTED" uuid="142177AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="DIVORCED" uuid="1058AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="DURATION_UNITS" uuid="1732AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="EDUCATION" uuid="1712AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="EFAVIRENZ" uuid="75523AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="EMPLOYEE" uuid="1540AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -59,9 +67,11 @@
  <ref key="FARMER" uuid="1538AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="FLUCONAZOLE" uuid="76488AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="FREE_TEXT_GENERAL" uuid="160632AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="FULLY_IMMUNIZED_CHILD" uuid="164134AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="GRAVIDA" uuid="5624AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="HEIGHT_CM" uuid="5090AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="HEPATITIS_B" uuid="111759AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="HEPATOTOXICITY" uuid="159098AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="HIV_PROGRAM" uuid="160631AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="HIV_DNA_POLYMERASE_CHAIN_REACTION" uuid="844AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="HIV_DNA_POLYMERASE_CHAIN_REACTION_QUALITATIVE" uuid="1030AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -80,21 +90,26 @@
  <ref key="IMMUNIZATIONS" uuid="984AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="INFANT_FEEDING_METHOD" uuid="1151AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="INDETERMINATE" uuid="1138AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="INDICATION_FOR_TB_PROPHYLAXIS" uuid="162276AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="INHIBITORY" uuid="1303AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="Initial_World_Health_Organization_HIV_stage" uuid="160553AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ISONIAZID" uuid="78280AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ISONIAZID_DISPENSED" uuid="162230AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="ISONIAZID_PREVENTIVE_THERAPY_PROGRAM" uuid="29453c24-fbc6-4872-9708-8010eab6a6f0"/>
  <ref key="ISONIAZID_PROPHYLAXIS" uuid="1679AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="LAST_MONTHLY_PERIOD" uuid="1427AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="LIVING_WITH_PARTNER" uuid="1060AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="LOPINAVIR" uuid="79040AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="MEBENDAZOLE" uuid="79413AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="MALNUTRITION_TYPE" uuid="159402AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MARRIED_MONOGAMOUS" uuid="5555AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MARRIED_POLYGAMOUS" uuid="159715AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MATERNAL_AND_CHILD_HEALTH_PROGRAM" uuid="159937AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MATERNAL_CONDITION_DURING_PUERPERIUM" uuid="162093AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="MEASLES_RUBELLA_VACCINE" uuid="162586AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="MEASLES_VACCINATION" uuid="36AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MEDICATION_ORDERS" uuid="1282AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="MEDICATION_DURATION" uuid="159368AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
- <ref key="DURATION_UNITS" uuid="1732AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="METHOD_OF_DELIVERY" uuid="5630AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="METHOD_OF_ENROLLMENT" uuid="160540AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="METHOD_OF_FAMILY_PLANNING" uuid="374AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -110,8 +125,10 @@
  <ref key="NEONTAL_RESUSCITATION" uuid="162131AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NEVER_MARRIED" uuid="1057AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NEVIRAPINE" uuid="80586AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="NUTRITIONAL_STUNTING" uuid="164085AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="LAMIVUDINE" uuid="78643AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="LAMIVUDINE_NEVIRAPINE_ZIDOVUDINE" uuid="1652AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="MICRONUTRIENT_SUPPORT" uuid="161649AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NO" uuid="1066AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NO_SIGNS_OR_SYMPTOMS_OF_DISEASE" uuid="1660AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NONE" uuid="1107AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -120,19 +137,27 @@
  <ref key="NOT_ASSESSED" uuid="160737AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NOT_DETECTED" uuid="1302AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="NOT_HIV_TESTED" uuid="1402AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="NUTRITIONAL_SUPPORT" uuid="5484AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" /> 
  <ref key="OCCUPATION" uuid="1542AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ON_TREATMENT_FOR_DISEASE" uuid="1662AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="OPTION_B_PLUS_PROGRAM" uuid="162226AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="OTHER_NON_CODED" uuid="5622AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="OVERALL_TREATMENT_ADHERENCE" uuid="164075AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PARITY" uuid="1053AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PARITY_ABORTION" uuid="1823AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PARITY_TERM" uuid="160080AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PARTNER_HIV_STATUS" uuid="1436AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PARTNER_OR_SPOUSE" uuid="5617AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="PATIENT_OUTCOME" uuid="160433AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PATIENT_REPORTED_CURRENT_TUBERCULOSIS_PROPHYLAXIS" uuid="1110AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PEDIATRIC_INPATIENT_SERVICE" uuid="160537AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="PERIPHERAL_NEUROPATHY" uuid="118983AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="POLIO_VACCINATION_INACTIVATED" uuid="1422AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="POLIO_VACCINATION_ORAL" uuid="783AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="PYRIDOXINE" uuid="82912AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" /> 
  <ref key="LOCATION_OF_BIRTH" uuid="1572AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PMTCT_PROGRAM" uuid="160538AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="PNEUMOCOCCAL_CONJUGATE_VACCINE" uuid="162342AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="POSITIVE" uuid="703AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="POOR_SAMPLE_QUALITY" uuid="1304AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PREGNANCY_DURATION_AMOUNT" uuid="1789AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -141,8 +166,11 @@
  <ref key="PROBLEM_ADDED" uuid="6042AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="PULMONARY_TB" uuid="42AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="RALTEGRAVIR" uuid="154378AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="RASH" uuid="512AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="REASON_FOR_PROGRAM_DISCONTINUATION" uuid="161555AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="REASON_ELIGIBLE_FOR_ART" uuid="162225AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="REFERRED_FROM" uuid="160481AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="REFERRED_TO" uuid="163145AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" /> 
  <ref key="REFERRING_CLINIC_OR_HOSPITAL" uuid="159371AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="RELAPSE_SMEAR_POSITIVE_TUBERCULOSIS" uuid="159877AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="REPLACEMENT_FEEDING" uuid="1595AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -151,7 +179,9 @@
  <ref key="RETREATMENT_AFTER_DEFAULT_TUBERCULOSIS" uuid="159873AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="RETURN_VISIT_DATE" uuid="5096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="REVIEW_OF_SYSTEMS_DEVELOPMENTAL" uuid="1189AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="REVISIT_THIS_YEAR" uuid="164142AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="RITONAVIR" uuid="83412AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="ROTA_VIRUS_VACCINE" uuid="83531AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="SCHEDULED_VISIT" uuid="1246AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="SECONDARY_EDUCATION" uuid="1714AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="SEXUAL_ABSTINENCE" uuid="159524AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -185,7 +215,9 @@
  <ref key="UNIVERSITY_COMPLETE" uuid="160300AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="UNKNOWN" uuid="1067AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="VCT_PROGRAM" uuid="160539AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="VITAMIN_A" uuid="86339AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="WEIGHT_KG" uuid="5089AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="WEIGHT_FOR_AGE_STATUS" uuid="1854AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="WEEKS" uuid="1073AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="WHO_STAGE_1_ADULT" uuid="1204AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="WHO_STAGE_1_PEDS" uuid="1220AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
@@ -198,5 +230,6 @@
  <ref key="WIDOWED" uuid="1059AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="YES" uuid="1065AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="YEARS" uuid="1734AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
+ <ref key="YELLOW_FEVER_VACCINE" uuid="5864AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
  <ref key="ZIDOVUDINE" uuid="86663AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" />
 </refs>

api/src/main/distro/metadata/forms.xml

@@ -1,6 +1,7 @@
 <!-- Forms used by KenyaEMR, listed A-Z -->
 <refs type="Form">
  <ref key="CLINICAL_ENCOUNTER" uuid="e958f902-64df-4819-afd4-7fb061f59308" />
+ <ref key="GENE_XPERT" uuid="f1eaceeb-c865-4e23-b68e-6523de403ac7" />
  <ref key="HIV_FAMILY_HISTORY" uuid="7efa0ee0-6617-4cd7-8310-9f95dfee7a82" />
  <ref key="LAB_RESULTS" uuid="7e603909-9ed5-4d0c-a688-26ecb05d8b6e" />
  <ref key="OBSTETRIC_HISTORY" uuid="8e4e1abf-7c08-4ba8-b6d8-19a9f1ccb6c9" />

api/src/main/distro/metadata/identifierTypes.xml

@@ -1,10 +1,12 @@
 <!-- Patient identifier types used by KenyaEMR, listed A-Z -->
 <refs type="IdentifierType">
+ <ref key="CWC_NUMBER" uuid="1dc8b419-35f2-4316-8d68-135f0689859b" />
  <ref key="DISTRICT_REGISTRATION_NUMBER" uuid="d8ee3b8c-a8fc-4d6b-af6a-9423be5f8906" />
  <ref key="HEI_UNIQUE_NUMBER" uuid="0691f522-dd67-4eeb-92c8-af5083baf338" />
  <ref key="MEDICAL_RECORD_NUMBER" uuid="dfacd928-0370-4315-99d7-6ec1c9f7ae76" />
  <ref key="NATIONAL_ID" uuid="49af6cdc-7968-4abb-bf46-de10d7f4859f" />
  <ref key="OLD" uuid="8d79403a-c2cc-11de-8d13-0010c6dffd0f" />
  <ref key="PATIENT_CLINIC_NUMBER" uuid="b4d66522-11fc-45c7-83e3-39a1af21ae0d" />
  <ref key="UNIQUE_PATIENT_NUMBER" uuid="05ee9cf4-7242-4a17-b4d4-00f707265c8a" />
+ <ref key="NATIONAL_UNIQUE_PATIENT_IDENTIFIER" uuid="f85081e2-b4be-4e48-b3a4-7994b69bb101" />
 </refs>

api/src/main/distro/metadata/programs.xml

@@ -4,4 +4,5 @@
  <ref key="MCH_CS" uuid="c2ecdf11-97cd-432a-a971-cfd9bd296b83" />
  <ref key="MCH_MS" uuid="b5d9e05f-f5ab-4612-98dd-adb75438ed34" />
  <ref key="TB" uuid="9f144a34-3a4a-44a9-8486-6b7af6cc64f6" />
+ <ref key="IPT" uuid="335517a1-04bc-438b-9843-1ba49fb7fcd9" />
 </refs>

api/src/main/java/org/openmrs/module/kenyaemr/calculation/library/ipt/LastAdherenceMeasurementCalculation.java

@@ -0,0 +1,34 @@
+package org.openmrs.module.kenyaemr.calculation.library.ipt;
+
+import java.util.Collection;
+import java.util.Map;
+import java.util.Set;
+
+import org.openmrs.Program;
+import org.openmrs.calculation.patient.PatientCalculationContext;
+import org.openmrs.calculation.result.CalculationResultMap;
+import org.openmrs.module.kenyacore.calculation.AbstractPatientCalculation;
+import org.openmrs.module.kenyacore.calculation.Calculations;
+import org.openmrs.module.kenyacore.calculation.Filters;
+import org.openmrs.module.kenyaemr.Dictionary;
+import org.openmrs.module.kenyaemr.metadata.IPTMetadata;
+import org.openmrs.module.metadatadeploy.MetadataUtils;
+
+public class LastAdherenceMeasurementCalculation extends AbstractPatientCalculation {
+
+ /**
+ * Evaluates the calculation
+ * @should calculate null for patients with no recorded CD4 count
+ * @should calculate last CD4 count for all patients with a recorded CD4 count
+ */
+ @Override
+ public CalculationResultMap evaluate(Collection<Integer> cohort, Map<String, Object> parameterValues, PatientCalculationContext context) {
+ Program iptProgram = MetadataUtils.existing(Program.class, IPTMetadata._Program.IPT);
+
+ // Get all patients who are alive and initiated into IPT
+ Set<Integer> alive = Filters.alive(cohort, context);
+ Set<Integer> inIPT = Filters.inProgram(iptProgram, alive, context);
+
+ return Calculations.lastObs(Dictionary.getConcept(Dictionary.OVERALL_TREATMENT_ADHERENCE), inIPT, context);
+ }
+}

api/src/main/java/org/openmrs/module/kenyaemr/calculation/library/ipt/LastHepatotoxicityCalculation.java

@@ -0,0 +1,31 @@
+package org.openmrs.module.kenyaemr.calculation.library.ipt;
+import java.util.Collection;
+import java.util.Map;
+import java.util.Set;
+
+import org.openmrs.Program;
+import org.openmrs.calculation.patient.PatientCalculationContext;
+import org.openmrs.calculation.result.CalculationResultMap;
+import org.openmrs.module.kenyacore.calculation.AbstractPatientCalculation;
+import org.openmrs.module.kenyacore.calculation.Calculations;
+import org.openmrs.module.kenyacore.calculation.Filters;
+import org.openmrs.module.kenyaemr.Dictionary;
+import org.openmrs.module.kenyaemr.metadata.IPTMetadata;
+import org.openmrs.module.metadatadeploy.MetadataUtils;
+
+public class LastHepatotoxicityCalculation extends AbstractPatientCalculation {
+
+ @Override
+ public CalculationResultMap evaluate(Collection<Integer> cohort, Map<String, Object> parameterValues,
+ PatientCalculationContext context) {
+
+ Program iptProgram = MetadataUtils.existing(Program.class, IPTMetadata._Program.IPT);
+
+ // Get all patients who are alive and initiated into IPT
+ Set<Integer> alive = Filters.alive(cohort, context);
+ Set<Integer> inIPT = Filters.inProgram(iptProgram, alive, context);
+
+ return Calculations.lastObs(Dictionary.getConcept(Dictionary.HEPATOTOXICITY), inIPT, context);
+
+ }
+}

api/src/main/java/org/openmrs/module/kenyaemr/calculation/library/ipt/LastPeripheralNeuropathyCalculation.java

@@ -0,0 +1,33 @@
+package org.openmrs.module.kenyaemr.calculation.library.ipt;
+
+import java.util.Collection;
+import java.util.Map;
+import java.util.Set;
+
+import org.openmrs.Program;
+import org.openmrs.calculation.patient.PatientCalculationContext;
+import org.openmrs.calculation.result.CalculationResultMap;
+import org.openmrs.module.kenyacore.calculation.AbstractPatientCalculation;
+import org.openmrs.module.kenyacore.calculation.Calculations;
+import org.openmrs.module.kenyacore.calculation.Filters;
+import org.openmrs.module.kenyaemr.Dictionary;
+import org.openmrs.module.kenyaemr.metadata.IPTMetadata;
+import org.openmrs.module.metadatadeploy.MetadataUtils;
+
+public class LastPeripheralNeuropathyCalculation extends AbstractPatientCalculation {
+
+ @Override
+ public CalculationResultMap evaluate(Collection<Integer> cohort, Map<String, Object> parameterValues,
+ PatientCalculationContext context) {
+
+ Program iptProgram = MetadataUtils.existing(Program.class, IPTMetadata._Program.IPT);
+
+ // Get all patients who are alive and initiated into IPT
+ Set<Integer> alive = Filters.alive(cohort, context);
+ Set<Integer> inIPT = Filters.inProgram(iptProgram, alive, context);
+
+ return Calculations.lastObs(Dictionary.getConcept(Dictionary.PERIPHERAL_NEUROPATHY), inIPT, context);
+
+ }
+
+}

api/src/main/java/org/openmrs/module/kenyaemr/calculation/library/ipt/LastRashCalculation.java

@@ -0,0 +1,33 @@
+package org.openmrs.module.kenyaemr.calculation.library.ipt;
+
+import java.util.Collection;
+import java.util.Map;
+import java.util.Set;
+
+import org.openmrs.Program;
+import org.openmrs.calculation.patient.PatientCalculationContext;
+import org.openmrs.calculation.result.CalculationResultMap;
+import org.openmrs.module.kenyacore.calculation.AbstractPatientCalculation;
+import org.openmrs.module.kenyacore.calculation.Calculations;
+import org.openmrs.module.kenyacore.calculation.Filters;
+import org.openmrs.module.kenyaemr.Dictionary;
+import org.openmrs.module.kenyaemr.metadata.IPTMetadata;
+import org.openmrs.module.metadatadeploy.MetadataUtils;
+
+public class LastRashCalculation extends AbstractPatientCalculation {
+
+ @Override
+ public CalculationResultMap evaluate(Collection<Integer> cohort, Map<String, Object> parameterValues,
+ PatientCalculationContext context) {
+
+ Program iptProgram = MetadataUtils.existing(Program.class, IPTMetadata._Program.IPT);
+
+ // Get all patients who are alive and initiated into IPT
+ Set<Integer> alive = Filters.alive(cohort, context);
+ Set<Integer> inIPT = Filters.inProgram(iptProgram, alive, context);
+
+ return Calculations.lastObs(Dictionary.getConcept(Dictionary.RASH), inIPT, context);
+
+ }
+
+}