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  1. deepC deepC Public

    A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

    HTML 33 12

  2. deepHaem deepHaem Public

    Implementation of a deep convolutional neural network for predicting chromatin features from DNA sequence

    Python 17 6

  3. NGseqBasic NGseqBasic Public

    Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

    Shell 10 2

  4. sasquatch sasquatch Public

    Predicting the impact of regulatory SNPs from cell and tissue specific DNase-footprints

    R 9 4

  5. Downes_2021_LZTFL1_Covid Downes_2021_LZTFL1_Covid Public

    Custom codes for data analysis.

    Perl 3 1

  6. captureC captureC Public

    CaptureC analysis code by James Davies - to serve as supplements to the publication.

    1 5

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Showing 10 of 29 repositories
  • deepC Public

    A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

    Hughes-Genome-Group/deepC’s past year of commit activity
    HTML 33 GPL-3.0 12 1 0 Updated May 15, 2024
  • sasquatch Public

    Predicting the impact of regulatory SNPs from cell and tissue specific DNase-footprints

    Hughes-Genome-Group/sasquatch’s past year of commit activity
    R 9 GPL-3.0 4 2 0 Updated Mar 1, 2023
  • mlv Public
    Hughes-Genome-Group/mlv’s past year of commit activity
    Python 1 GPL-3.0 2 5 12 Updated Dec 8, 2022
  • deepHaem Public

    Implementation of a deep convolutional neural network for predicting chromatin features from DNA sequence

    Hughes-Genome-Group/deepHaem’s past year of commit activity
    Python 17 GPL-3.0 6 0 0 Updated Jan 13, 2022
  • mlv-docs Public
    Hughes-Genome-Group/mlv-docs’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 24, 2021
  • Downes_2021_LZTFL1_Covid Public

    Custom codes for data analysis.

    Hughes-Genome-Group/Downes_2021_LZTFL1_Covid’s past year of commit activity
    Perl 3 1 0 0 Updated Sep 2, 2021
  • CCseqBasicS Public

    CCseqBasic - stable version of CCseqBasic analysis pipeline (getting updates when dev pipeline features get stable enough)

    Hughes-Genome-Group/CCseqBasicS’s past year of commit activity
    Shell 1 MIT 1 0 0 Updated May 11, 2021
  • CIView Public
    Hughes-Genome-Group/CIView’s past year of commit activity
    JavaScript 0 GPL-3.0 2 0 0 Updated Feb 1, 2021
  • Hughes-Genome-Group/Lanceotron-User-Docs’s past year of commit activity
    HTML 0 GPL-3.0 1 1 0 Updated Dec 7, 2020
  • MEV Public
    Hughes-Genome-Group/MEV’s past year of commit activity
    Python 0 0 0 0 Updated Sep 29, 2020

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