Analysis of Gene Expression Omnibus Leukaemia Data from the Illumina HumanMethylation450 Array

Alice Zhu, Rachel Edgar, Shaun Jackman and Nick Fishbane

This work is the term project for the 2013 offering of UBC STAT 540, Statistical methods for high dimensional biology.

This flow chart of our analysis summarizes the purpose of each R script and shows the order in which these scripts are run.

Name		Name	Last commit message	Last commit date
Latest commit History 65 Commits
.gitignore		.gitignore
450K_annotation.R		450K_annotation.R
README.md		README.md
aggregate.R		aggregate.R
aggregate_raw_norm_filter.R		aggregate_raw_norm_filter.R
cluster_RPMM.R		cluster_RPMM.R
coord_to_gene.R		coord_to_gene.R
data_import.R		data_import.R
differential_methylation_figures.R		differential_methylation_figures.R
exploratory.r		exploratory.r
exploratory_DM.R		exploratory_DM.R
exploratory_postNorm.r		exploratory_postNorm.r
flowchart.dot		flowchart.dot
flowchart.png		flowchart.png
hcluster.R		hcluster.R
limma.R		limma.R
lme_all.R		lme_all.R
lme_all_plot.Rmd		lme_all_plot.Rmd
lme_apl.R		lme_apl.R
lme_plp.R		lme_plp.R
master.R		master.R
normalize.r		normalize.r
plot_cluster_RPMM.R		plot_cluster_RPMM.R
plot_cluster_bootstrap.R		plot_cluster_bootstrap.R
topGO.R		topGO.R

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